Structstrings
Implementation of the dot bracket annotations with Biostrings

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144
Source code
21
Man pages
10
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Structstrings: Implementation of the dot bracket annotations with Biostrings
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API for Structstrings
Implementation of the dot bracket annotations with Biostrings

Global functions
.BStringSetToDotBracketStringSet Source code
.BStringToDotBracketString Source code
.BStringToDotBracketStringSet Source code
.CSDataFrameList_To_CSDotBracketDataFrameList Source code
.DataFrame_To_DotBracketDataFrame Source code
.DotBracketStringSet.show_frame Source code
.DotBracketStringSet.show_frame_line Source code
.DotBracketStringSetToIntegerList Source code
.IntegerListToDotBracketStringSet Source code
.SimpleDataFrameList_To_DotBracketDataFrameList Source code
.SimpleSplitDataFrameList_To_SimpleSplitDotBracketDataFrameList Source code
.add_DotBracket_colors Source code
.adjust_DotBracketDataFrame_col_types Source code
.check_for_dbtype_dbdf Source code
.check_for_dbtype_string Source code
.check_for_invalid_db_letters Source code
.check_for_invalid_db_values Source code
.check_matched_postions Source code
.convert_char_type_to_character Source code
.convert_db_annotation Source code
.flatten_input_list Source code
.get_db_types Source code
.get_dot_bracket Source code
.get_idx_of_loops_from_dbdfl Source code
.get_idx_of_loops_from_dbs Source code
.get_pairing Source code
.integerToDotBracketString Source code
.integerToDotBracketStringSet Source code
.is_a_bool Source code
.needs_letters_normalized Source code
.norm_DotBracketDataFrame_input Source code
.norm_bracket_type Source code
.norm_dbdf_bracket_type Source code
.norm_letters Source code
.normarg_structure Source code
.onLoad Source code
.onUnload Source code
.pos_letters Source code
.read_StructuredXStringSet Source code
.rename_unnamed_args Source code
.str_replace_all_custom Source code
.subseq Source code
.toSeqSnippet Source code
.valid.DotBracketDataFrame Source code
.valid.DotBracketDataFrameList Source code
.valid.DotBracketString Source code
.valid.DotBracketStringSet Source code
.valid.LoopIndexList Source code
.valid.StructuredXStringSet Source code
CompressedSplitDotBracketDFrameList-class Man page
CompressedSplitDotBracketDataFrameList-class Man page
DB Man page Source code
DBDF Man page Source code
DBDFL Man page Source code
DBS Man page Source code
DBSL Man page Source code
DOTBRACKET_ALPHABET Man page
DOTBRACKET_CHAR_VALUES Man page
DotBracketDFrame-class Man page
DotBracketDFrameList-class Man page
DotBracketDataFrame Man page Source code
DotBracketDataFrame-class Man page
DotBracketDataFrameList Man page Source code
DotBracketDataFrameList-class Man page
DotBracketString Man page Source code
DotBracketString-class Man page
DotBracketStringSet Man page Source code
DotBracketStringSet-class Man page
DotBracketStringSet-io Man page
DotBracketStringSetList Man page Source code
DotBracketStringSetList-class Man page
LoopIndexList Man page Source code
LoopIndexList-class Man page
SDBDFL Man page Source code
STRUCTURE_CLOSE_CHR Man page
STRUCTURE_NEUTRAL_CHR Man page
STRUCTURE_OPEN_CHR Man page
SimpleSplitDotBracketDFrameList-class Man page
SimpleSplitDotBracketDataFrameList-class Man page
SplitDotBracketDataFrameList Man page Source code
Structstrings Man page
Structstrings-data Man page
Structstrings-internals Man page
StructuredRNAStringSet Man page Source code
StructuredRNAStringSet-class Man page
StructuredXStringSet Man page Source code
[<-,DotBracketDataFrame-method Man page
add_colors Source code
alphabet,DotBracketString-method Man page
colnames<-,CompressedSplitDotBracketDataFrameList-method Man page
convertAnnotation Man page
convertAnnotation,DotBracketString-method Man page
convertAnnotation,DotBracketStringSet-method Man page
convertAnnotation,DotBracketStringSetList-method Man page
dbs Man page
dotbracket Man page
dotbracket,StructuredXStringSet-method Man page
dotbracket<- Man page
dotbracket<-,StructuredXStringSet-method Man page
encoding,DotBracketString-method Man page
getBasePairing Man page
getBasePairing,DotBracketString-method Man page
getBasePairing,DotBracketStringSet-method Man page
getBasePairing,StructuredXStringSet-method Man page
getDotBracket Man page
getDotBracket,CompressedSplitDotBracketDataFrameList-method Man page
getDotBracket,DotBracketDataFrame-method Man page
getDotBracket,DotBracketDataFrameList-method Man page
getDotBracket,SimpleSplitDotBracketDataFrameList-method Man page
getLoopIndices Man page
getLoopIndices,CompressedSplitDotBracketDataFrameList-method Man page
getLoopIndices,DotBracketDataFrame-method Man page
getLoopIndices,DotBracketDataFrameList-method Man page
getLoopIndices,DotBracketString-method Man page
getLoopIndices,DotBracketStringSet-method Man page
getLoopIndices,SimpleSplitDotBracketDataFrameList-method Man page
getLoopIndices,StructuredXStringSet-method Man page
make_DOTBRACKET_COLORED_LETTERS Source code
nseq Man page
readDotBracketStringSet Man page Source code
readStructuredRNAStringSet Man page Source code
saveDotBracketStringSet Man page Source code
writeDotBracketStringSet Man page Source code
writeStructuredXStringSet Man page Source code
Structstrings documentation built on Dec. 11, 2020, 2:01 a.m.

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