API for aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| .whichUnique | Source code |
| 1. Calibration and Normalization | Man page |
| Non-documented objects | Man page |
| SmoothSplineLikelihood.print | Man page |
| aroma.light | Man page |
| aroma.light-package | Man page |
| averageQuantile | Man page |
| averageQuantile.list | Man page |
| averageQuantile.matrix | Man page |
| backtransformAffine | Man page |
| backtransformAffine.matrix | Man page |
| backtransformPrincipalCurve | Man page |
| backtransformPrincipalCurve.matrix | Man page |
| backtransformPrincipalCurve.numeric | Man page |
| backtransformXYCurve | Man page |
| backtransformXYCurve.matrix | Man page |
| calibrateMultiscan | Man page |
| calibrateMultiscan.matrix | Man page |
| callNaiveGenotypes | Man page |
| callNaiveGenotypes.numeric | Man page |
| distanceBetweenLines | Man page |
| distanceBetweenLines.default | Man page |
| findPeaksAndValleys | Man page |
| findPeaksAndValleys.density | Man page |
| findPeaksAndValleys.numeric | Man page |
| fitIWPCA | Man page |
| fitIWPCA.matrix | Man page |
| fitNaiveGenotypes | Man page |
| fitNaiveGenotypes.numeric | Man page |
| fitPrincipalCurve | Man page |
| fitPrincipalCurve.matrix | Man page |
| fitXYCurve | Man page |
| fitXYCurve.matrix | Man page |
| iwpca | Man page |
| iwpca.matrix | Man page |
| likelihood | Man page |
| likelihood.smooth.spline | Man page |
| lines.XYCurveFit | Man page |
| medianPolish | Man page |
| medianPolish.matrix | Man page |
| normalizeAffine | Man page |
| normalizeAffine.matrix | Man page |
| normalizeAverage | Man page |
| normalizeAverage.list | Man page |
| normalizeAverage.matrix | Man page |
| normalizeCurveFit | Man page |
| normalizeCurveFit.matrix | Man page |
| normalizeDifferencesToAverage | Man page |
| normalizeDifferencesToAverage.list | Man page |
| normalizeFragmentLength | Man page |
| normalizeFragmentLength.default | Man page |
| normalizeLoess | Man page |
| normalizeLoess.matrix | Man page |
| normalizeLowess | Man page |
| normalizeLowess.matrix | Man page |
| normalizeQuantile | Man page |
| normalizeQuantile.default | Man page |
| normalizeQuantileRank | Man page |
| normalizeQuantileRank.list | Man page |
| normalizeQuantileRank.matrix | Man page |
| normalizeQuantileRank.numeric | Man page |
| normalizeQuantileSpline | Man page |
| normalizeQuantileSpline.list | Man page |
| normalizeQuantileSpline.matrix | Man page |
| normalizeQuantileSpline.numeric | Man page |
| normalizeRobustSpline | Man page |
| normalizeRobustSpline.matrix | Man page |
| normalizeSpline | Man page |
| normalizeSpline.matrix | Man page |
| normalizeTumorBoost | Man page |
| normalizeTumorBoost.numeric | Man page |
| pairedAlleleSpecificCopyNumbers | Man page |
| pairedAlleleSpecificCopyNumbers.numeric | Man page |
| plotDensity | Man page |
| plotDensity.data.frame | Man page |
| plotDensity.density | Man page |
| plotDensity.list | Man page |
| plotDensity.matrix | Man page |
| plotDensity.numeric | Man page |
| plotMvsA | Man page |
| plotMvsA.matrix | Man page |
| plotMvsAPairs | Man page |
| plotMvsAPairs.matrix | Man page |
| plotMvsMPairs | Man page |
| plotMvsMPairs.matrix | Man page |
| plotXYCurve | Man page |
| plotXYCurve.matrix | Man page |
| plotXYCurve.numeric | Man page |
| predict.lowess | Man page |
| print,SmoothSplineLikelihood-method | Man page |
| print.SmoothSplineLikelihood | Man page |
| projectUontoV | Man page Source code |
| robustSmoothSpline | Man page |
| robustSmoothSpline.default | Man page |
| rowAverages | Man page |
| rowAverages.matrix | Man page |
| sampleCorrelations | Man page |
| sampleCorrelations.matrix | Man page |
| sampleTuples | Man page |
| sampleTuples.default | Man page |
| scalarProduct | Man page Source code |
| tr | Man page Source code |
| wpca | Man page |
| wpca.matrix | Man page |
