AttractorModuleSet-class | Class AttractorModuleSet |
attract-package | Methods to find the Gene Expression Modules that Represent... |
buildCorMatrix | Internal function - builds the correlation matrix between an... |
buildCustomIncidenceMatrix | This function builds an incidence matrix for custom gene... |
buildKeggIncidenceMatrix | Internal function - buildings the KEGG incidence matrix... |
calcFuncSynexprs | Functional enrichmental analysis for a set of synexpression... |
calcInform | Function calculates the informativeness metric (average MSS)... |
calcModfstat | Function calculates a modified F-statistic for a set of... |
calcRss | Function calculates the average RSS for a set of cluster... |
exprs.dat | Gene Expression Matrix of Published Data |
filterDataSet | This function filters our lowly expressed genes in RNAseq... |
findAttractors | Infers the set of cell-lineage specific gene expression... |
findCorrPartners | Determines Genes with Highly Correlated Expression Profiles... |
findOnepwaySynexprs | Internal function - finds the synexpression groups for a... |
findSynexprs | This function finds the synexpression groups present within a... |
flagPwayExists | Internal function - flags a gene if it exists in a pathway. |
getCustomGenes | Function removes genes from the custom pathway that... |
getPwayGenes | Function removes genes from the chosen pathway that... |
loring.eset | An ExpressionSet Object containing published data from M?ller... |
plotsynexprs | Visualizing the Average Expression Profile of a Synexpression... |
removeFlatGenes | Flags a set of genes which demonstrates little variation... |
samp.info | samp.info Contains the Sample Information for the Mueller... |
subset.loring.eset | An ExpressionSet Object containing published data from M?ller... |
SynExpressionSet-class | Class SynExpressionSet |
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