Files in customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
R/Outputaberrant.R
R/OutputVarproseq_single.R
R/PrepareAnnotationRefseq.R
R/utils.R
R/SharedJunc.R
R/Ensembl.utils.R
R/Multiple_VCF.R
R/Bed2Range.R
R/OutputVarproseq.R
R/OutputNovelJun.R
R/Outputproseq.R
R/JunctionType.R
R/PrepareAnnotationEnsembl.R
R/OutputsharedPro.R
R/easyRun_mul.R
R/Varlocation.R
R/aaVariation.R
R/InputVcf.R
R/makeTranscriptDbFromBiomart_archive.R
R/OutputVarprocodingseq.R
R/easyRun.R
R/Positionincoding.R
R/calculateRPKM.R
vignettes/customProDB.Rnw
man/Positionincoding.Rd
man/easyRun.Rd
man/PrepareAnnotationEnsembl.Rd
man/OutputVarproseq.Rd
man/Bed2Range.Rd
man/JunctionType.Rd
man/aaVariation.Rd
man/easyRun_mul.Rd
man/Multiple_VCF.Rd
man/Outputaberrant.Rd
man/OutputVarprocodingseq.Rd
man/PrepareAnnotationRefseq.Rd
man/OutputsharedPro.Rd
man/calculateRPKM.Rd
man/Outputproseq.Rd
man/Varlocation.Rd
man/SharedJunc.Rd
man/OutputVarproseq_single.Rd
man/OutputNovelJun.Rd
man/InputVcf.Rd
inst/CITATION
inst/doc/customProDB.Rnw
inst/doc/customProDB.R
inst/doc/customProDB.pdf
inst/extdata/refseq_pro_seq.fasta
inst/extdata/test_mul.vcf
inst/extdata/refseq_coding_seq.fasta
inst/extdata/bams/test1_sort.bam.bai
inst/extdata/bams/test1_sort.bam
inst/extdata/bams/test2_sort.bam.bai
inst/extdata/bams/test3_sort.bam
inst/extdata/bams/test2_sort.bam
inst/extdata/bams/test3_sort.bam.bai
inst/extdata/refseq/exon_anno.RData
inst/extdata/refseq/txdb.sqlite
inst/extdata/refseq/ids.RData
inst/extdata/refseq/proseq.RData
inst/extdata/refseq/cosmic.RData
inst/extdata/refseq/procodingseq.RData
inst/extdata/refseq/splicemax.RData
inst/extdata/refseq/dbsnpinCoding.RData
inst/extdata/beds/junctions1.bed
inst/extdata/beds/junctions2.bed
inst/extdata/beds/junctions3.bed
inst/extdata/vcfs/test2.vcf
inst/extdata/vcfs/test3.vcf
inst/extdata/vcfs/test1.vcf
inst/extdata/tmp/test_indel.fasta
inst/extdata/tmp/test_snv.fasta
inst/extdata/tmp/test_junc.fasta
inst/extdata/tmp/test_rpkm.fasta
inst/extdata/tmp/test_snv.tab
