API for normr
Normalization and difference calling in ChIP-seq data

Global functions
BamsignalsConfig	Man page
BamsignalsCountConfig	Man page
DifferenceCalling	Man page
DifferentialPeakCalling	Man page
EnrichmentCalling	Man page
NormRCountConfig	Man page
NormRCountConfig-class	Man page
NormRFit	Man page
NormRFit-class	Man page
NormRfit	Man page
PeakCalling	Man page
RegimeCalling	Man page
computeEnrichmentWithMap	Source code
configPairedEnd	Man page
configSingleEnd	Man page
countConfigPairedEnd	Man page
countConfigPairedEnd,ANY-method	Man page
countConfigSingleEnd	Man page
countConfigSingleEnd,ANY-method	Man page
diffR	Man page
diffR,character,character,GenomicRanges-method	Man page
diffR,character,character,character-method	Man page
diffR,character,character,data.frame-method	Man page
diffR,integer,integer,GenomicRanges-method	Man page
diffR-generic	Man page
differenceCall	Man page
diffr	Man page
em	Source code
enrichR	Man page
enrichR,character,character,GenomicRanges-method	Man page
enrichR,character,character,character-method	Man page
enrichR,character,character,data.frame-method	Man page
enrichR,integer,integer,GenomicRanges-method	Man page
enrichR-generic	Man page
enrichmentCall	Man page
enrichr	Man page
exportR	Man page
exportR,NormRFit,character-method	Man page
getBamsignalsFilter	Man page
getClasses	Man page
getClasses,NormRFit-method	Man page
getCounts	Man page
getCounts,NormRFit-method	Man page
getEnrichment	Man page
getEnrichment,NormRFit-method	Man page
getFilter	Man page
getFilter,NormRCountConfig-method	Man page
getNormRCountConfigFilter	Man page
getPosteriors	Man page
getPosteriors,NormRFit-method	Man page
getPvalues	Man page
getPvalues,NormRFit-method	Man page
getQvalues	Man page
getQvalues,NormRFit-method	Man page
getRanges	Man page
getRanges,NormRFit-method	Man page
handleCharCharChar	Source code
handleCharCharDf	Source code
handleCharCharGR	Source code
length,NormRFit-method	Man page
logRowSum	Source code
logSumVector	Source code
mapToOriginal	Source code
mapToUniqueWithMap	Source code
normR	Man page
normR-package	Man page
normRFit	Man page
normr	Man page
normr_core	Source code
normrfit	Man page
plot,NormRFit,missing-method	Man page
plot.NormRFit	Man page
print,NormRCountConfig-method	Man page
print,NormRFit-method	Man page
regimeCall	Man page
regimeR	Man page
regimeR,character,character,GenomicRanges,numeric-method	Man page
regimeR,character,character,character,numeric-method	Man page
regimeR,character,character,data.frame,numeric-method	Man page
regimeR,integer,integer,GenomicRanges,numeric-method	Man page
regimeR-generic	Man page
regimer	Man page
show,NormRCountConfig-method	Man page
show,NormRFit-method	Man page
summary,NormRFit-method	Man page