Global functions | |
---|---|
add.slop | Source code |
apply.polygenic.score | Man page Source code |
assemble.heatmap.colors | Source code |
assess.pgs.vcf.allele.match | Man page Source code |
calculate.missing.genotype.dosage | Source code |
check.for.no.info.fields | Source code |
check.pgs.weight.columns | Man page Source code |
check.vcf.for.split.multiallelic.sites | Source code |
classify.variable.type | Source code |
combine.pgs.bed | Man page Source code |
combine.vcf.with.pgs | Man page Source code |
convert.allele.frequency.to.dosage | Man page Source code |
convert.alleles.to.pgs.dosage | Man page Source code |
convert.pgs.to.bed | Man page Source code |
create.feature.color.vector | Source code |
create.pgs.density.plot | Man page Source code |
create.pgs.rank.plot | Man page Source code |
create.pgs.with.continuous.phenotype.plot | Man page Source code |
custom.aggregation.function | Source code |
flip.DNA.allele | Man page Source code |
format.chromosome.notation | Man page Source code |
generate.filename | Source code |
get.combined.multiallelic.variant.by.sample.matrix | Source code |
get.na.coordinates.for.heatmap | Source code |
get.non.risk.multiallelic.site.row | Source code |
get.pgs.percentiles | Man page Source code |
get.variant.by.sample.matrix | Source code |
import.pgs.weight.file | Man page Source code |
import.vcf | Man page Source code |
open.input.connection | Source code |
parse.pgs.input.header | Man page Source code |
pgs.distribution.plotting.input.checks | Source code |
rank.plotting.input.checks | Source code |
run.pgs.regression | Man page Source code |
split.pgs.by.phenotype | Source code |
validate.allele.input | Source code |
validate.file.write.inputs | Source code |
validate.pgs.data.input | Source code |
validate.phenotype.data.input | Source code |
validate.vcf.input | Source code |
write.apply.polygenic.score.output.to.file | Man page Source code |
write.per.sample.pgs.table | Source code |
write.pgs.regression.table | Source code |
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