Files in BREADR
Estimates Degrees of Relatedness (Up to the Second Degree) for Extreme Low-Coverage Data
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/processEigenstrat_old.R
R/relatedness_example.R
R/utils-pipe.R
R/callRelatedness.R
R/read_snp.R
R/processEigenstrat.R
R/saveSLICES.R
R/sim_geno.R
R/get_column.R
R/read_ind.R
R/test_degree.R
R/plotLOAF.R
R/plotSLICE.R
R/counts_example.R
R/utils.R
inst/CITATION
inst/WORDLIST
inst/doc/example-pipeline.R
inst/doc/example-pipeline.html
inst/doc/example-pipeline.Rmd
inst/manuscript/BREAD_20230220.pdf
inst/extdata/example.geno.txt
inst/extdata/broken.snp.txt
inst/extdata/example.snp.txt
inst/extdata/example.ind.txt
build/vignette.rds
tests/testthat.R
tests/spelling.R
tests/testthat/test-plotLOAF.R
tests/testthat/test-read_snp.R
tests/testthat/test-plotSLICE.R
tests/testthat/test-processEigenstrat.R
tests/testthat/test-callRelatedness.R
tests/testthat/test-test_degree.R
tests/testthat/test-saveSLICES.R
vignettes/example-pipeline.Rmd
data/relatedness_example.rda
data/counts_example.rda
man/processEigenstrat_old.Rd
man/test_degree.Rd
man/split_line.Rd
man/counts_example.Rd
man/sim_geno.Rd
man/processEigenstrat.Rd
man/relatedness_example.Rd
man/get_column_new.Rd
man/pipe.Rd
man/read_snp.Rd
man/callRelatedness.Rd
man/read_ind.Rd
man/plotSLICE.Rd
man/plotLOAF.Rd
man/saveSLICES.Rd
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/README-pressure-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-5-1.png
