atlasDownloader | Download occurrence data from the Atlas of Living Australia... |
BeeBDCQuery | Query the bee taxonomy and country checklist |
bees3sp | A flagged dataset of 105 random bee occurrence records from... |
beesChecklist | Download a country-level checklist of bees from Discover Life |
beesFlagged | A flagged dataset of 100 random bee occurrence records |
beesRaw | A dataset of 100 random bee occurrence records without flags... |
beesTaxonomy | Download a nearly complete taxonomy of bees globally |
chordDiagramR | Build a chord diagram of duplicate occurrence links |
ColTypeR | Sets up column names and types |
continentOutlieRs | Flag continent-level outliers with a provided checklist. |
coordUncerFlagR | Flag occurrences with an uncertainty threshold |
countryNameCleanR | Fix country name issues using a user-input list |
countryOutlieRs | Flag country-level outliers with a provided checklist. |
dataProvTables | Build a table of data providers for bee occurrence records |
dataSaver | Simple function to save occurrence AND EML data as a list |
dateFindR | Find dates in other columns |
diagonAlley | Find fill-down errors |
dirMaker | Set up global directory paths and create folders |
dupePlotR | Create a compound bar graph of duplicate data sources |
dupeSummary | Identifies duplicate occurrence records |
fileFinder | Finds files within a directory |
flagAbsent | Flags occurrences that are marked as absent |
flagLicense | Flag license protected records |
flagRecorder | Loads, appends, and saves occurrence flag data |
flagSummaryTable | Build a per-species summary for each and all flags |
formattedCombiner | Combine the formatted USGS data with the main dataset |
GBIFissues | Flags records with GBIF issues |
harmoniseR | Harmonise taxonomy of bee occurrence data |
idMatchR | Attempt to match database_ids from a prior run |
importOccurrences | Imports the most-recent repoMerge data |
interactiveMapR | Creates interactive html maps for species |
jbd_CfC_chunker | Get country names from coordinates |
jbd_coordCountryInconsistent | Flags coordinates that are inconsistent with the stated... |
jbd_coordinates_precision | Flags coordinates for imprecision |
jbd_coordinates_transposed | Identify transposed geographic coordinates |
jbd_create_figures | Create figures reporting the results of the bdc/BeeBDC... |
jbd_Ctrans_chunker | Wraps jbd_coordinates_transposed to identify and fix... |
manualOutlierFindeR | Finds outliers, and their duplicates, as determined by... |
PaigeIntegrater | Integrate manually-cleaned data from Paige Chesshire |
plotFlagSummary | Generate a plot summarising flagged data |
readr_BeeBDC | A wrapper for all of the data readr_functions |
repoFinder | Find GBIF, ALA, iDigBio, and SCAN files in a directory |
repoMerge | Import occurrences from GBIF, ALA, iDigBio, and SCAN... |
summaryFun | Create or update the .summary flag column |
summaryMaps | Create country-level summary maps of species and occurrence... |
taxadbToBeeBDC | Import and convert taxadb taxonomies to BeeBDC format |
testChecklist | An example of the beesChecklist file |
testTaxonomy | An example of the beesTaxonomy file |
USGS_formatter | Find, import, and format USGS data to Darwin Core |
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