API for CancerEvolutionVisualization
Publication Quality Phylogenetic Tree Plots
| Global functions | |
|---|---|
| SRCGrob | Man page Source code |
| add.axes | Source code |
| add.axis.label | Source code |
| add.default.text.columns | Source code |
| add.main | Source code |
| add.node.ellipse | Source code |
| add.normal | Source code |
| add.pie.nodes | Source code |
| add.segs3 | Source code |
| add.text2 | Source code |
| add.tree.segs | Source code |
| add.vaf | Source code |
| add.xaxis | Source code |
| add.yaxis | Source code |
| adjust.branch.lengths | Source code |
| adjust.lengths | Source code |
| adjust.tree | Source code |
| assign.weight | Source code |
| axis.overlap | Source code |
| calculate.angles.fixed | Source code |
| calculate.angles.radial | Source code |
| calculate.main.plot.size | Source code |
| check.circular.node.parents | Source code |
| check.overlap | Source code |
| check.parent.values | Source code |
| colours | Man page |
| compute.clones | Source code |
| count.leaves.per.node | Source code |
| create.ccf.heatmap | Source code |
| create.ccf.summary.heatmap | Source code |
| create.cluster.heatmap | Source code |
| data.frame.to.array | Source code |
| degrees.to.radians | Source code |
| extend.axis | Source code |
| f0 | Source code |
| filter.invalid.text.nodes | Source code |
| filter.null.text | Source code |
| get.CP.polygons | Source code |
| get.branch.length.colnames | Source code |
| get.branch.length.scale | Source code |
| get.clones | Source code |
| get.colour.luminance | Source code |
| get.colours | Source code |
| get.contrast.ratio | Source code |
| get.default.branch.length.colnames | Source code |
| get.default.branch.lengths | Source code |
| get.default.node.label.colour | Source code |
| get.default.yat | Source code |
| get.num.tiers | Source code |
| get.plot.width | Source code |
| get.root.node | Source code |
| get.seg.coords | Source code |
| get.smart.branch.length.scale | Source code |
| get.tree.depth.modifier | Source code |
| get.value.index | Source code |
| get.y.axis.position | Source code |
| gridPie | Source code |
| is.circular.node.parent | Source code |
| limit.branch.length.columns | Source code |
| make.clone.polygons | Source code |
| make.clone.tree.grobs | Source code |
| make.plot.viewport | Source code |
| make.polygon | Source code |
| override.angles | Source code |
| package.clone.grobs | Source code |
| pieGrob | Source code |
| position.clones | Source code |
| position.clones.no.vaf | Source code |
| position.node.text | Source code |
| position.nodes | Source code |
| position.polygons | Source code |
| prep.branch.lengths | Source code |
| prep.edge.colour.column | Source code |
| prep.edge.colours | Source code |
| prep.node.label.colours | Source code |
| prep.text | Source code |
| prep.text.line.dist | Source code |
| prep.tree | Source code |
| prep.tree.parent | Source code |
| prep.yat | Source code |
| reindex.column | Source code |
| reorder.nodes | Source code |
| reorder.nodes.by.CP | Source code |
| reorder.trunk.node | Source code |
| reposition.clones | Source code |
| reset.tree.node.ids | Source code |
| sigmoid | Source code |
| sigmoid.up | Source code |
| validate.branch.colname | Source code |
| validate.branch.length.values | Source code |
