Man pages for ClusterGVis
One-Step to Cluster and Visualize Gene Expression Data
| BEAM_res | This is a test data for this package test data describtion |
| clusterData | Cluster Data Based on Different Methods |
| enrichCluster | Perform GO/KEGG Enrichment Analysis for Multiple Clusters |
| exprs | Generic to access cds count matrix |
| exprs-cell_data_set-method | Method to access cds count matrix |
| exps | This is a test data for this package test data describtion |
| filter.std-modified-by-Mfuzz-filter.std | using filter.std to filter low expression genes |
| getClusters | Determine Optimal Clusters for Gene Expression or Pseudotime... |
| net | This is a test data for this package test data describtion |
| normalized_counts | Return a size-factor normalized and (optionally)... |
| pipe | Pipe operator |
| plot_genes_branched_heatmap2 | Create a heatmap to demonstrate the bifurcation of gene... |
| plot_multiple_branches_heatmap2 | Create a heatmap to demonstrate the bifurcation of gene... |
| plot_pseudotime_heatmap2 | Plots a pseudotime-ordered, row-centered heatmap which is... |
| prepareDataFromscRNA | Prepare scRNA Data for clusterGvis Analysis |
| pre_pseudotime_matrix | Calculate and return a smoothed pseudotime matrix for the... |
| pseudotime | Generic to extract pseudotime from CDS object |
| pseudotime-cell_data_set-method | Method to extract pseudotime from CDS object |
| sig_gene_names | This is a test data for this package test data describtion |
| size_factors | Get the size factors from a cds object. |
| termanno | This is a test data for this package test data describtion |
| termanno2 | This is a test data for this package test data describtion |
| traverseTree | traverseTree function |
| visCluster | using visCluster to visualize cluster results from... |
