Man pages for CohortGenerator
Cohort Generation for the OMOP Common Data Model
| addCohortSubsetDefinition | Add cohort subset definition to a cohort definition set |
| checkAndFixCohortDefinitionSetDataTypes | Check if a cohort definition set is using the proper data... |
| CohortGenerator-package | CohortGenerator: Cohort Generation for the OMOP Common Data... |
| CohortSubsetDefinition | Cohort Subset Definition |
| CohortSubsetOperator | Cohort Subset Operator |
| computeChecksum | Computes the checksum for a value |
| createCohortSubset | A definition of subset functions to be applied to a set of... |
| createCohortSubsetDefinition | Create Subset Definition |
| createCohortTables | Create cohort tables |
| createDemographicSubset | Create createDemographicSubset Subset |
| createEmptyCohortDefinitionSet | Create an empty cohort definition set |
| createEmptyNegativeControlOutcomeCohortSet | Create an empty negative control outcome cohort set |
| createLimitSubset | Create Limit Subset |
| createResultsDataModel | Create the results data model tables on a database server. |
| createSubsetCohortWindow | A definition of subset functions to be applied to a set of... |
| DemographicSubsetOperator | Demographic Subset Operator |
| dropCohortStatsTables | Drop cohort statistics tables |
| exportCohortStatsTables | Export the cohort statistics tables to the file system |
| generateCohortSet | Generate a set of cohorts |
| generateNegativeControlOutcomeCohorts | Generate a set of negative control outcome cohorts |
| getCohortCounts | Count the cohort(s) |
| getCohortDefinitionSet | Get a cohort definition set |
| getCohortInclusionRules | Get Cohort Inclusion Rules from a cohort definition set |
| getCohortStats | Get Cohort Inclusion Stats Table Data |
| getCohortTableNames | Used to get a list of cohort table names to use when creating... |
| getDataMigrator | Get database migrations instance |
| getRequiredTasks | Get a list of tasks required when running in incremental mode |
| getResultsDataModelSpecifications | Get specifications for CohortGenerator results data model |
| getSubsetDefinitions | Get cohort subset definitions from a cohort definition set |
| insertInclusionRuleNames | Used to insert the inclusion rule names from a cohort... |
| isCamelCase | Used to check if a string is in lower camel case |
| isCohortDefinitionSet | Is the data.frame a cohort definition set? |
| isFormattedForDatabaseUpload | Is the data.frame formatted for uploading to a database? |
| isSnakeCase | Used to check if a string is in snake case |
| isTaskRequired | Is a task required when running in incremental mode |
| LimitSubsetOperator | Limit Subset Operator |
| migrateDataModel | Migrate Data model |
| readCsv | Used to read a .csv file |
| recordTasksDone | Record a task as complete |
| runCohortGeneration | Run a cohort generation and export results |
| sampleCohortDefinitionSet | Sample Cohort Definition Set |
| saveCohortDefinitionSet | Save the cohort definition set to the file system |
| saveCohortSubsetDefinition | Save cohort subset definitions to json |
| saveIncremental | Used in incremental mode to save values to a file |
| SubsetCohortWindow | Time Window For Cohort Subset Operator |
| SubsetOperator | Abstract base class for subsets. |
| uploadResults | Upload results to the database server. |
| writeCsv | Used to write a .csv file |
