Man pages for CommKern
Network-Based Communities and Kernel Machine Methods
| adj_RI | Adjusted Rand Index (ARI) |
| CommKern | CommKern |
| community_allegiance | Community Allegiance |
| community_plot | Communities by layer plot |
| compute_modularity_matrix | Compute modularity matrix |
| compute_multimodal_mod | Compute multimodal modularity matrix |
| consensus_similarity | Consensus Similarity |
| count_pairs | Count pairs |
| degree | Node degree calculation |
| entropy | Entropy |
| ext_distance | Extrinsic evaluation distance matrix creation |
| find_start_temp | Starting temperature |
| get_weights | Simulated network edge weights |
| group_adj_perturb | Group adjacency matrices |
| group_network_perturb | Simulated group networks |
| ham_distance | Hamiltonian distance matrix creation |
| heatbath_multimodal | Multimodal heatbath algorithm |
| hms | Hierarchical multimodal spinglass algorithm |
| kernel | Distance-based kernel |
| matrix_plot | Functional and Structural Matrix Plot |
| matrix_to_df | Convert matrices to dataframe list for network |
| NMI | Normalized mutual information (NMI) |
| purity | Purity |
| SBM_net | Simulated functional and structural connectivity with nested... |
| score_cont_nonparam | Nonparametric score function for distance-based kernel and... |
| score_cont_semiparam | Semiparametric score function for distance-based kernel and... |
| score_log_nonparam | Nonparametric score function for distance-based kernel and... |
| score_log_semiparam | Semiparametric score function for distance-based kernel |
| simasd_array | Simulated Array |
| simasd_comm_df | Simulated partitions of nodes to communities from HMS... |
| simasd_covars | Simulated demographics dataset modeled of a subset of the... |
| simasd_hamil_df | Simulated Hamiltonian values from HMS algorithm |
| simnet_df_perturb | Simulated network data frame |
| sort_pairs | Sort pairs |
| subset_matrix_to_df | Convert matrices to list of data frames for subnetworks |
| tr | Trace |
| up_low | Bounds of grid search function |
| zrand | Rand z-score |
