Man pages for CrossExpression
Cross-Expression Analysis of Spatial Transcriptomics Data
| bullseye_plot | Outputs a circular bullseye plot for a gene pair. The central... |
| bullseye_scores | Calculates bullseye statistics for ALL gene pairs. Counts the... |
| correlation | Computes Pearson's correlation between pairs of columns. If... |
| cross_expression | Computes cross-expression and co-expression p-values between... |
| cross_expression_correlation | Computes gene-gene correlations between cross-expressing... |
| expression | Example gene expression matrix |
| get_cooccurrence_stats | Calculates the number of elements common between columns of... |
| locations | Example cell location matrix |
| rotate_coordinates | This function takes x and y coordinates and rotates them... |
| smooth_cells | Smooths cells' gene expression by averaging its expression by... |
| spatial_enrichment | Determines whether the supplied genes show spatial enrichment... |
| tissue_expression_plot | Plots gene expression and cross-expression on tissue by... |
