| dEploid | Deconvolute mixed haplotypes |
| DEploid-package | DEploid: Deconvolute Mixed Genomes with Unknown Proportions |
| plotAltVsRefPlotly | Plot coverage |
| plotHistWSAFPlotly | WSAF histogram |
| plotObsExpWSAFPlotly | Plot WSAF |
| plotWSAFVsPLAFPlotly | Plot WSAF vs PLAF |
| reexports | Extract read counts from plain text file |
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