Man pages for DrugExposureDiagnostics
Diagnostics for OMOP Common Data Model Drug Records
| checkDaysSupply | Check if Days_supply is the same as... |
| checkDbType | Check the database type. |
| checkDrugDose | Get a summary of the daily drug dose |
| checkDrugSig | Check the drug sig field; this is the verbatim instruction... |
| checkIngredientInTable | Check ingredient is present in given table |
| checkIsIngredient | Check is an ingredient |
| checkLogical | Check if given object is a boolean. |
| checkSampleMinCellCount | Check that the sample is bigger than the mincellcount |
| checkTableExists | Check if given table exists in cdm. |
| checkVerbatimEndDate | Check the verbatim_end_date field |
| computeDBQuery | Store the given input in a remote database table. It will be... |
| dataPlotPanel | dataPlotPanel |
| DrugExposureDiagnostics-package | DrugExposureDiagnostics: Diagnostics for OMOP Common Data... |
| executeChecks | Execute given checks on Drug Exposure. |
| executeChecksSingleIngredient | Execute given checks on Drug Exposure for a single... |
| getAllCheckOptions | Get all options that can be passed to the "checks" parameter |
| getDrugMissings | Check missings in drug exposure records |
| getDrugRecords | Drug exposure records for ingredients of interest |
| getDrugRoutes | Get drug exposure route types |
| getDrugSourceConcepts | Check drug exposure source types |
| getDrugTypes | Get drug exposure record types |
| getDuration | Compute the difference in days between 2 variables in a... |
| ingredientDescendantsInDb | Get the descendants for the given ingredients |
| metaDataPanel | metaDataPanel |
| mockDrugExposure | Mock Drug exposure tables for ingredients of interest |
| obscureCounts | Obscure the small number of counts |
| pipe | Pipe operator |
| printDurationAndMessage | Print duration from start to now and print it as well as new... |
| runBenchmarkExecuteSingleIngredient | Run benchmark for ExecuteSingleIngredient |
| ShinyApp | DrugExposureDiagnostics ShinyApp |
| ShinyModule | Module Decorator Class |
| summariseChecks | Create a summary about the diagnostics results |
| summariseDrugExposureDuration | Summarise drug exposure record durations |
| summariseQuantity | Summarise the quantity column of the drug_exposure table |
| summariseTimeBetween | Check time in between drug records per person and report the... |
| validateChecks | Validate the "checks" parameter |
| viewResults | View the results in the Shiny app |
| writeFile | Write a result to a file on disk. |
| writeIngredientResultToDisk | Write (ingredient) diagnostics results on disk in given... |
| writeResultToDisk | Write diagnostics results to a zip file on disk in given... |
| writeZipToDisk | Write (ingredient) diagnostics results on disk in given... |
