Man pages for DrugUtilisation
Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model
| addCumulativeDose | To add a new column with the cumulative dose. To add multiple... |
| addCumulativeQuantity | To add a new column with the cumulative quantity. To add... |
| addDaysExposed | To add a new column with the days exposed. To add multiple... |
| addDaysPrescribed | To add a new column with the days prescribed. To add multiple... |
| addDrugRestart | Add drug restart information as a column per follow-up period... |
| addDrugUtilisation | Add new columns with drug use related information |
| addIndication | Add a variable indicating individuals indications |
| addInitialDailyDose | To add a new column with the initial daily dose. To add... |
| addInitialExposureDuration | To add a new column with the duration of the first exposure.... |
| addInitialQuantity | To add a new column with the initial quantity. To add... |
| addNumberEras | To add a new column with the number of eras. To add multiple... |
| addNumberExposures | To add a new column with the number of exposures. To add... |
| addTimeToExposure | To add a new column with the time to exposure. To add... |
| addTreatment | Add a variable indicating individuals medications |
| benchmarkDrugUtilisation | Run benchmark of drug utilisation cohort generation |
| cdmDoc | Helper for consistent documentation of 'cdm'. |
| censorDateDoc | Helper for consistent documentation of 'censorDate'. |
| cohortDoc | Helper for consistent documentation of 'cohort'. |
| cohortGapEra | Get the gapEra used to create a cohort |
| cohortIdDoc | Helper for consistent documentation of 'cohortId'. |
| compNameDoc | Helper for consistent documentation of 'name' for computed... |
| conceptSetDoc | Helper for consistent documentation of 'conceptSet'. |
| daysPrescribedDoc | Helper for consistent documentation of 'daysPrescribed'. |
| drugUtilisationDoc | Helper for consistent documentation of... |
| DrugUtilisation-package | DrugUtilisation: Summarise Patient-Level Drug Utilisation in... |
| erafyCohort | Erafy a cohort_table collapsing records separated gapEra days... |
| gapEraDoc | Helper for consistent documentation of 'gapEra'. |
| generateAtcCohortSet | Generate a set of drug cohorts based on ATC classification |
| generateDrugUtilisationCohortSet | Generate a set of drug cohorts based on given concepts |
| generateIngredientCohortSet | Generate a set of drug cohorts based on drug ingredients |
| indexDateDoc | Helper for consistent documentation of 'indexDate'. |
| ingredientConceptIdDoc | Helper for consistent documentation of 'ingredientConceptId'. |
| mockDrugUtilisation | It creates a mock database for testing DrugUtilisation... |
| nameStyleDoc | Helper for consistent documentation of 'nameStyle'. |
| newNameDoc | Helper for consistent documentation of 'name' for new... |
| numberExposuresDoc | Helper for consistent documentation of 'numberExposures'. |
| patternsWithFormula | Patterns valid to compute daily dose with the associated... |
| patternTable | Function to create a tibble with the patterns from current... |
| plotDoc | Helper for consistent documentation of 'plot'. |
| plotDrugRestart | Generate a custom ggplot2 from a summarised_result object... |
| plotDrugUtilisation | Plot the results of 'summariseDrugUtilisation' |
| plotIndication | Generate a plot visualisation (ggplot2) from the output of... |
| plotProportionOfPatientsCovered | Plot proportion of patients covered |
| plotTreatment | Generate a custom ggplot2 from a summarised_result object... |
| reexports | Objects exported from other packages |
| requireDrugInDateRange | Restrict cohort to only cohort records within a certain date... |
| requireIsFirstDrugEntry | Restrict cohort to only the first cohort record per subject |
| requireObservationBeforeDrug | Restrict cohort to only cohort records with the given amount... |
| requirePriorDrugWashout | Restrict cohort to only cohort records with a given amount of... |
| restrictIncidentDoc | Helper for consistent documentation of 'restrictIncident'. |
| resultDoc | Helper for consistent documentation of 'result'. |
| strataDoc | Helper for consistent documentation of 'strata'. |
| summariseDoseCoverage | Check coverage of daily dose computation in a sample of the... |
| summariseDrugRestart | Summarise the drug restart for each follow-up period of... |
| summariseDrugUtilisation | This function is used to summarise the dose utilisation table... |
| summariseIndication | Summarise the indications of individuals in a drug cohort |
| summariseProportionOfPatientsCovered | Summarise proportion Of patients covered |
| summariseTreatment | This function is used to summarise treatments received |
| tableDoc | Helper for consistent documentation of 'table'. |
| tableDoseCoverage | Format a dose_coverage object into a visual table. |
| tableDrugRestart | Format a drug_restart object into a visual table. |
| tableDrugUtilisation | Format a drug_utilisation object into a visual table. |
| tableIndication | Create a table showing indication results |
| tableProportionOfPatientsCovered | Create a table with proportion of patients covered results |
| tableTreatment | Format a summarised_treatment result into a visual table. |
