Man pages for FlywayNet
Estimate Migration Birds Flyways Network with HSMM
| estimate_migration_ABC | Estimates migration parameters using an ABC method. |
| estimate_migration_from_trajectories | Estimates migration parameters using trajectories. |
| estimate_migration_from_trajectories_C | Internal C function (do not use). |
| estimate_migration_MCEM | Estimates migration parameters using an MCEM method. |
| estimate_migration_MCEM_C | Internal C function (do not use). |
| FlywayNet-package | 'FlywayNet' package: infer the structure of migratory bird... |
| generate_modified_migration | Return a modified migration according generative parameters. |
| generate_observedcounts | Generate observed counts from the set of bird trajectories. |
| generate_random_migration | Generate a migration structure with a random structure. |
| generate_toy_migration | Generate a toy migration structure with 5 sites. |
| generate_trajectories | Generate trajectories of birds. |
| generate_trajectories_C | Internal C function (do not use). |
| get_counts | Count birds on each site at each time step from given set of... |
| get_counts_C | Internal C function (do not use). |
| get_freeparametersvalue | Extract free parameter values from a migration structure. |
| get_observation_probability | Computes the probability of observations given the birds... |
| get_observation_probability_C | Internal C function (do not use). |
| get_paramlikelihood | Computes, by simulation, the log-likelihood of parameters |
| new_migration | Initialize a migration structure. |
| plot.migration | Plot a migration network from transition probabilities and... |
| plot_observedcounts | Barplot observed counts at different sites and time steps. |
| plot_trajectories | Barplot of birds counts par site and per time step, given... |
| read_migration | Read a migration structure in a text file. |
| reestimate_migration_from_MCEMruns | Estimates migration parameters from multiple MCEM runs |
| set_freeparametersvalue | Assign free parameter values to a migration structure. |
| validate_migration | Check a migration structure. |
| write_migration | Write a migration structure in a text file. |
