Man pages for GaMaBioMD
Diversity Analysis for Sequence Data
| A.expand_accession_ranges | This function expands accession number ranges, creating a... |
| B.get_sequence_information | Retrieves sequence information for a given list of... |
| C.preprocess_for_alignment | Preprocesses data for sequence alignment. |
| D.write_fasta | Writes a data frame to a FASTA file. |
| E.SampleID_vs_NumSequences | Plots the number of sequences and the probability of... |
| F.data_sampling | Samples data from each SampleID group if specified, otherwise... |
| G.alignment_info | Sequence Alignment and Analysis |
| H.compute_average_similarity_matrix | Compute Average Similarity Matrix |
| I.generate_heatmaps | Generate Heatmaps |
| J.clustering_average_similarity | Perform Hierarchical Clustering for average similarity matrix |
| K.clustering_percent_similarity | Perform Hierarchical Clustering for Percent Similarity |
| L.bubble_plot_count | Bubble Plot Count Function |
| M.bubble_plot_percentage | Bubble Plot Percentage Function |
| N.tree_average_similarity | Generate Phylogenetic Tree and Color Palette for Average... |
| O.tree_percent_similarity | Generate Phylogenetic Tree and Color Palette for Percent... |
