GeneSelectR
'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets

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GeneSelectR: 'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets
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'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets

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README.md
NAMESPACE
DESCRIPTION
LICENSE
R/annotate_gene_lists.R R/configure_environment.R R/run_simplify_enrichment.R R/plot_upset.R R/plot_metrics.R R/GO_enrichment_analysis.R R/classes.R R/compute_GO_child_term_metrics.R R/skip_if_no_modules.R R/GeneSelectR.R R/calculate_overlap_coefficients.R R/plot_overlap_heatmaps.R R/python_env_setup.R R/zzz.R R/globals.R R/plot_feature_importance.R R/import_python_packages.R R/utils.R
inst/doc/example.html
inst/doc/example.R inst/doc/example.Rmd
inst/docker/Dockerfile
inst/python/geneset_stability.py
inst/python/fit_and_evaluate_pipelines.py
inst/python/correlation_filter.py
inst/python/GeneSelectR.py
inst/python/requirements.txt
inst/extras/logo.R inst/extras/display_heatmap.R inst/extras/testing_draft.R inst/extras/UrbanRandomSubset.R inst/extras/run_multiple_simplifyGO.R inst/extras/benchmark_geneset_stability.R inst/extras/working.R inst/extras/compare_gene_lists.R
inst/extras/draft
inst/extras/GeneSelectR_stable.R inst/extras/calculate_gene_set_stability.R inst/extras/GeneSelectR_parallel.R
build/vignette.rds
tests/testthat.R tests/testthat/test_plot_feature_importance.R tests/testthat/test_overlap_heatmaps.R tests/testthat/test_plot_metrics.R tests/testthat/test_annotate_gene_lists.R tests/testthat/test_compute_GO_child_term_metrics.R tests/testthat/test_GeneSelectR.R tests/testthat/test_calculate_overlap_coefficients.R tests/testthat/test_GO_enrichment_analysis.R
tests/testthat/fixtures/UrbanRandomSubset.rda
tests/testthat/fixtures/PipelineResults.rds
tests/testthat/fixtures/EnrichGO_subset.rds
tests/testthat/fixtures/AnnotatedGeneLists.rds
tests/testthat/fixtures/background.rds
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man/define_sklearn_modules.Rd man/calculate_mean_cv_scores.Rd man/steps_to_tuples.Rd man/aggregate_feature_importances.Rd man/plot_overlap_heatmaps.Rd man/split_data.Rd man/create_pipelines.Rd man/plot_metrics.Rd man/evaluate_test_metrics.Rd man/check_python_modules_available.Rd man/plot_feature_importance.Rd man/python-modules.Rd man/GO_enrichment_analysis.Rd man/install_python_packages.Rd man/set_reticulate_python.Rd man/create_conda_env.Rd man/configure_environment.Rd man/dot-onAttach.Rd man/calculate_overlap_coefficients.Rd man/perform_grid_search.Rd man/GeneList-class.Rd man/enable_multiprocess.Rd man/compute_GO_child_term_metrics.Rd man/run_simplify_enrichment.Rd man/pipeline_to_list.Rd man/import_python_packages.Rd man/AnnotatedGeneLists-class.Rd man/calculate_permutation_feature_importance.Rd man/set_default_fs_methods.Rd man/get_feature_importances.Rd man/PipelineResults-class.Rd man/GeneSelectR.Rd man/TestMetrics-class.Rd man/plot_upset.Rd man/load_python_packages.Rd man/annotate_gene_lists.Rd man/skip_if_no_modules.Rd man/create_test_metrics_df.Rd man/set_default_param_grids.Rd
man/figures/GeneSelectR.png
GeneSelectR documentation built on May 29, 2024, 4:01 a.m.

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