Man pages for GeneSelectR
'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets
| aggregate_feature_importances | Aggregate Feature Importances |
| AnnotatedGeneLists-class | AnnotatedGeneLists class |
| annotate_gene_lists | Convert and Annotate Gene Lists |
| calculate_mean_cv_scores | Calculate Mean Cross-Validation Scores for Various Feature... |
| calculate_overlap_coefficients | Calculate Overlap and Similarity Coefficients between Feature... |
| calculate_permutation_feature_importance | Calculate Permutation Feature Importance |
| check_python_modules_available | Check Python Module Availability for Examples |
| compute_GO_child_term_metrics | Retrieve and Plot the Offspring Nodes of GO Terms |
| configure_environment | Configure Python Environment for GeneSelectR |
| create_conda_env | Create a specific Conda environment |
| create_pipelines | Create Pipelines |
| create_test_metrics_df | Create a Dataframe of Test Metrics |
| define_sklearn_modules | Define Python modules and scikit-learn submodules |
| dot-onAttach | Package Attachment Function |
| enable_multiprocess | Enable Multiprocessing in Python Environment |
| evaluate_test_metrics | Evaluate Test Metrics for a Grid Search Model |
| GeneList-class | GeneList class |
| GeneSelectR | Gene Selection and Evaluation with GeneSelectR |
| get_feature_importances | Get Feature Importances |
| GO_enrichment_analysis | Perform gene set enrichment analysis using clusterProfiler |
| import_python_packages | Import Python Libraries |
| install_python_packages | Install necessary Python packages in a specific Conda... |
| load_python_packages | Load Python Modules |
| perform_grid_search | Perform Grid Search or Random Search for Hyperparameter... |
| PipelineResults-class | PipelineResults class |
| pipeline_to_list | Convert Scikit-learn Pipeline to Named List |
| plot_feature_importance | Plot Feature Importance |
| plot_metrics | Plot Performance Metrics |
| plot_overlap_heatmaps | Generate Heatmaps to Visualize Overlap and Similarity... |
| plot_upset | Plot Feature Overlaps Using UpSet Plots |
| python-modules | Global references to Python modules |
| run_simplify_enrichment | Run simplifyGOFromMultipleLists with specified measure and... |
| set_default_fs_methods | Set Default Feature Selection Methods |
| set_default_param_grids | Set Default Parameter Grids for Feature Selection |
| set_reticulate_python | Set RETICULATE_PYTHON for the Current Session |
| skip_if_no_modules | Check if Python Modules are Available |
| split_data | Split Data into Training and Test Sets |
| steps_to_tuples | Convert Steps to Tuples |
| TestMetrics-class | Class Union for Test metrics output that could contain either... |
