Files in GenomeAdmixR

Simulate Admixture of Genomes

README.md R/RcppExports.R R/create_input_data.R R/calculate_heterozygosity.R R/calculate_fst.R R/save_load.R R/utilities.R R/plot_difference_frequencies.R R/calculate_ld.R R/calculate_allele_frequencies.R R/ancestry_module.R R/data.R R/plot_chromosome.R R/simulate_ancestry_migration.R R/plot_over_time.R R/joyplot_frequencies.R R/simulate_ancestry.R R/simulate_sequence.R R/plot_frequencies.R R/migration_settings.R R/simulate_ancestry_until.R R/sequence_module.R R/simulate_sequence_until.R R/simulate_sequence_migration.R R/junctions.R R/calculate_marker_frequency.R R/calculate_frequencies.R R/create_iso_female_data.R R/create_iso_female.R R/plot_start_end.R R/simulate_admixture.R inst/doc/Joyplots.Rmd inst/doc/Walkthrough.R inst/doc/Visualization.Rmd inst/doc/Joyplots.R inst/doc/Walkthrough.Rmd inst/doc/Demonstrate_isofemales.Rmd inst/doc/Empirical_data.Rmd inst/doc/Empirical_data.R inst/doc/Visualization.R inst/doc/Demonstrate_isofemales.R tests/testthat.R tests/testthat/test-simulate_migration.R tests/testthat/test-joyplot.R tests/testthat/test-selection.R tests/testthat/test-plink.R tests/testthat/test-isoFemales.R tests/testthat/test-fst.R tests/testthat/test-simulate_admixture.R tests/testthat/test-simulate_admixture_migration_data.R tests/testthat/test-combined_input_data.R tests/testthat/test-utilities.R tests/testthat/test-general_usage.R tests/testthat/Rplots.pdf tests/testthat/test-simulate_admixture_until.R tests/testthat/test-allele_frequencies.R tests/testthat/test-save_load.R tests/testthat/test-simulate_admixture_data.R tests/testthat/test-junctions.R tests/testthat/test-LD.R vignettes/Joyplots.Rmd vignettes/Visualization.Rmd vignettes/Walkthrough.Rmd vignettes/Demonstrate_isofemales.Rmd vignettes/Empirical_data.Rmd man/plot_start_end.Rd man/plot_over_time.Rd man/write_as_plink.Rd man/create_iso_female.Rd man/plot.individual.Rd man/iso_female_ancestry.Rd man/simulate_sequence_migration.Rd man/plot_dist_junctions.Rd man/ancestry_module.Rd man/calculate_heterozygosity.Rd man/print.genomeadmixr_data.Rd man/plot_difference_frequencies.Rd man/load_population.Rd man/sequence_module.Rd man/simulate_admixture.Rd man/GenomeAdmixR-package.Rd man/calculate_fst.Rd man/combine_input_data.Rd man/calculate_allele_frequencies.Rd man/plot_chromosome.Rd man/calculate_ld.Rd man/plot_joyplot_frequencies.Rd man/create_artificial_genomeadmixr_data.Rd man/print.individual.Rd man/plot_frequencies.Rd man/calculate_marker_frequency.Rd man/plink_to_genomeadmixr_data.Rd man/calculate_dist_junctions.Rd man/migration_settings.Rd man/dgrp2.3R.5k.data.Rd man/print.population.Rd man/vcfR_to_genomeadmixr_data.Rd man/read_input_data.Rd man/simulate_ancestry.Rd man/calculate_average_ld.Rd man/simulate_sequence.Rd man/simulation_data_to_genomeadmixr_data.Rd man/save_population.Rd man/simulate_ancestry_migration.Rd man/iso_female_sequence.Rd