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Holomics: An User-Friendly R 'shiny' Application for Multi-Omics Data Integration and Analysis
A 'shiny' application, which allows you to perform single- and multi-omics analyses using your own omics datasets. After the upload of the omics datasets and a metadata file, single-omics is performed for feature selection and dataset reduction. These datasets are used for pairwise- and multi-omics analyses, where automatic tuning is done to identify correlations between the datasets - the end goal of the recommended 'Holomics' workflow. Methods used in the package were implemented in the package 'mixomics' by Florian Rohart,Benoît Gautier,Amrit Singh,Kim-Anh Lê Cao (2017) <doi:10.1371/journal.pcbi.1005752> and are described there in further detail.
Package details |
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| Author | Katharina Munk [aut, cre], Eva M. Molin [aut, ctb], Günter Brader [ctb], Lisa Ziemba [ctb], AIT Austrian Institute of Technology GmbH [cph] |
| Maintainer | Katharina Munk <katharinamunk@yahoo.de> |
| License | GPL (>= 3) |
| Version | 1.1.1 |
| URL | https://github.com/MolinLab/Holomics |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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