API for Holomics
An User-Friendly R 'shiny' Application for Multi-Omics Data Integration and Analysis
| Global functions | |
|---|---|
| app_server | Source code |
| app_sys | Source code |
| app_ui | Source code |
| areValidColors | Source code |
| checkClassesInput | Source code |
| checkCompNcompCombination | Source code |
| checkDataNcompCompatibility | Source code |
| checkMissingData | Source code |
| cimToTable | Source code |
| combineLists | Source code |
| diabloCheckNcomp | Source code |
| diabloCheckOneDatasetNcomp | Source code |
| diabloCheckTwoDatasets | Source code |
| diabloCheckValidSelection | Source code |
| diabloGenerateNetwork | Source code |
| diabloGetNcomp | Source code |
| diabloGetNetworkDownloadHandler | Source code |
| extendClassTable | Source code |
| extendDataTable | Source code |
| filterByMAD | Source code |
| filterToTenThousand | Source code |
| generateChoices | Source code |
| generate_diablo_error_messages | Source code |
| generate_diablo_plots | Source code |
| generate_pca_error_messages | Source code |
| generate_pca_plots | Source code |
| generate_plsda_error_messages | Source code |
| generate_plsda_plots | Source code |
| generate_spls_error_messages | Source code |
| generate_spls_plots | Source code |
| getAnalysisParametersComponent | Source code |
| getArrowPlot | Source code |
| getCimPlot | Source code |
| getCircosPlot | Source code |
| getClassTable | Source code |
| getClassUploadUI | Source code |
| getCompImgReactive | Source code |
| getCompIndivReactive | Source code |
| getCompVarReactive | Source code |
| getDataTable | Source code |
| getDataUploadUI | Source code |
| getDatasetNames | Source code |
| getDiabloPlot | Source code |
| getDownloadHandler | Source code |
| getErrorMessage | Source code |
| getErrorRatePlot | Source code |
| getFilterBox | Source code |
| getFolds | Source code |
| getGroupColors | Source code |
| getLoadingsPlot | Source code |
| getNetworkPlot | Source code |
| getSamplePlot | Source code |
| getScreePlot | Source code |
| getSelectedVarsPlot | Source code |
| getSelectionComponent | Source code |
| getShinyAlert | Source code |
| getShinyErrorAlert | Source code |
| getShinyWarningAlert | Source code |
| getTestKeepX | Source code |
| getTitleAccordingToRepSpace | Source code |
| getTooltip | Source code |
| getTuneBox | Source code |
| getTuneButtonRow | Source code |
| getTunedParametersComponent | Source code |
| getVariablePlot | Source code |
| get_golem_config | Source code |
| getsPLSFolds | Source code |
| getsPLSSamplePlot | Source code |
| getsPLSSelectedVarsPlot | Source code |
| getsPLSTuningPlots | Source code |
| golem_add_external_resources | Source code |
| initClassMatrix | Source code |
| initClassValidator | Source code |
| initDataMatrix | Source code |
| initDataValidator | Source code |
| isValidName | Source code |
| mod_DIABLO_server | Source code |
| mod_DIABLO_ui | Source code |
| mod_PCA_server | Source code |
| mod_PCA_ui | Source code |
| mod_PLSDA_server | Source code |
| mod_PLSDA_ui | Source code |
| mod_Upload_server | Source code |
| mod_Upload_ui | Source code |
| mod_sPLS_server | Source code |
| mod_sPLS_ui | Source code |
| observe_diablo_ui_components | Source code |
| observe_pca_ui_components | Source code |
| observe_plsda_ui_components | Source code |
| observe_spls_ui_components | Source code |
| pairwiseCorrelation | Source code |
| pca_filterByLoadings | Source code |
| performMixMC | Source code |
| plotArrow | Source code |
| plotIndiv | Source code |
| plotLoadings | Source code |
| plotVar | Source code |
| plsda_filterByLoadings | Source code |
| removePostFix | Source code |
| removeRowsFromMatrix | Source code |
| renderImgComp | Source code |
| renderIndivComps | Source code |
| renderLoadComp | Source code |
| renderSelVarComp | Source code |
| renderVarComps | Source code |
| render_diablo_infotexts | Source code |
| render_diablo_ui_components | Source code |
| render_pca_infotexts | Source code |
| render_pca_ui_components | Source code |
| render_plsda_infotexts | Source code |
| render_plsda_ui_components | Source code |
| render_spls_infotexts | Source code |
| render_spls_ui_components | Source code |
| resetClassUI | Source code |
| resetDataUI | Source code |
| run_app | Man page Source code |
| run_diablo_analysis | Source code |
| run_pca_analysis | Source code |
| run_plsda_analysis | Source code |
| run_spls_analysis | Source code |
| selectVar | Source code |
| splsCheckNcomp | Source code |
| splsGetNcomp | Source code |
| tune_diablo_values | Source code |
| tune_values | Source code |
