Man pages for INDperform
Evaluation of Indicator Performances for Assessing Ecosystem States
| all_results_ex | Output tibble after applying all IND~pressure modeling... |
| approx_deriv | Alternative method for confidence interval approximations of... |
| calc_deriv | Calculate the derivatives of the IND response functions and... |
| calc_nrmse | Calculates the Normalized Root Mean Square Error (NRMSE) for... |
| calc_pred | Calculate predicted values and their confidence intervals for... |
| check_ind_press | Check class and variable names and types of ind and press... |
| check_input_tbl | Check class, existing variables and data types of input... |
| check_input_vec | Check class and data type of input vector |
| clust_sc | Score-based cluster analysis |
| compare_thresholds | Compare changes in t_var based on different threshold levels. |
| cond_boot | Conditional bootstraps |
| cooks_dist_gamm | Calculates the Cook's distance for Generalized Additive Mixed... |
| crit_scores_tmpl | Template of (sub-)criteria and corresponding scoring... |
| dist_sc | Score-based distance matrix |
| dist_sc_group | Distance matrix averaged across group scores |
| expect_resp | Score adjustments for sub-criterion 10.1 |
| find_id | Extracts the IND~pressure IDs in the tibble. |
| get_signif_code | Create a code indicating the significance of values given by... |
| get_sum_output | Extract specific outputs from the GAM(M) summary |
| ind_ex | Food web indicators of the Central Baltic Sea (Bornholm... |
| ind_init | Initialization of indicator-pressure models |
| ind_init_ex | Output tibble from the 'ind_init' function |
| INDperform-package | INDperform: Performance validation of ecological state... |
| is_value | Returns a logical vector whether input |
| loocv_thresh_gam | Leave-One-Out Cross-Validation (LOOCV) procedure for... |
| merge_models | Merging two model output tibbles. |
| merge_models_ex | Output tibble from the 'merge_models' function |
| model_gam | Modeling of indicator responses to single pressures with GAMs |
| model_gam_ex | Model output tibble from the 'model_gam' function |
| model_gamm | Modeling of indicator responses to single pressures with... |
| model_gamm_ex | Model output tibble from the 'model_gamm' function |
| model_trend | Modeling of indicator trends |
| model_trend_ex | Model output tibble from the 'model_trend' function |
| nrmse | Normalized Root Mean Square Error |
| pipe | Pipe operator |
| place_text | Place annotations to a specified position |
| plot_clust_sc | Dendrogram of the cluster analysis. |
| plot_diagnostics | Diagnostic plots for a fitted GAM, GAMM or threshold-GAM(M) |
| plot_model | Visualization of all IND~pressure-model results relevant for... |
| plot_outline | Helper functions for plot_model |
| plot_spie | Helper function for plot_spiechart |
| plot_spiechart | Create score-based spie chart |
| plot_statespace_ch | Convex hull plot |
| plot_statespace_ed | Time series plot of Euclidean distance |
| plot_thresh | Helper functions for plot_model |
| plot_trend | Create indicator trend plot |
| press_ex | Environmental variables representing pressures for pelagic... |
| press_type_ex | Pressure variables and their associated pressure types from... |
| scoring | Scoring of indicator performance |
| select_interaction | Create tibble of all potential pressure combinations to test... |
| select_model | Select the best correlation structure in the GAMM |
| sort_output_tbl | Rearrange columns in output tibble from IND~pressure modeling... |
| statespace_ch | Convex hull in 2-dimensional space |
| statespace_ed | Euclidean distance in state space |
| summary_sc | Summary of indicator performance scores |
| test_interaction | Test for interactions between 2 pressure variables |
| test_tac | Compute (partial) autocorrelation functions and test for... |
| thresh_gam | Fits a GAM with a threshold-formulation |
