IgAScores: Score Taxon-Level IgA Binding in IgA-Seq Experiments

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.

Package details

AuthorMatthew Jackson [aut, cre, cph]
MaintainerMatthew Jackson <mattjackson4@gmail.com>
LicenseGPL-3
Version0.1.2
URL https://doi.org/10.1101/2020.08.19.257501
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("IgAScores")

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IgAScores documentation built on Sept. 1, 2020, 9:08 a.m.