calcCurves | Calculate Relative Yield, YPR, SPR, SSB, and Recruitment... |
DataDir | Report the location of the Data Files |
FilterSmooth | Kalman filter and Rauch-Tung-Striebel smoother |
getFMfun | Calculate F/M given SPR and other parameters |
initialize-LB_lengths-method | Create a new LB_lengths object |
initialize-LB_obj-method | Create a new LB_obj object |
initialize-LB_pars-method | Create a new LB_pars object |
LB_lengths-class | An S4 class containing length data |
LB_obj-class | An S4 class containing all parameters for the LBSPR model |
LB_pars-class | An S4 class containing life history and other parameters |
LBSPRfit | Fit LBSPR model to length data |
LBSPRfit_ | Internal function to fit LBSPR model to length data |
LBSPR_NLLabsel | LBSPR Optimization function for age-based selectivity model |
LBSPR_NLLgtg | LBSPR Optimization function for GTG model |
LBSPRopt | Optimisation Routine for fitting LBSPR |
LBSPRsim | LBSPR Simulation Model |
LBSPRsim_ | Internal LBSPR Simulation Model |
plotCurves | Plot the Relative Yield, YPR, SPR, SSB, and Recruitment... |
plotEsts | Plot LBSPR model estimates |
plotMat | Plot the maturity-at-length and selectivity-at-length curves |
plotSim | General plotting function for simulated data |
plotSize | Plot the size data and model fits |
plotSPRCirc | Circle of estimated SPR and target and limit points |
plotTarg | Plot sampled length structure against target simulated size... |
Shiny | Run a Shiny Application |
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