Man pages for LTFGRS
Implementation of Several Phenotype-Based Family Genetic Risk Scores
| attach_attributes | Attach attributes to a family graphs |
| censor_family_onsets | Censor onset times in a family based on a proband's end of... |
| construct_covmat | Constructing a covariance matrix for a variable number of... |
| construct_covmat_multi | Constructing a covariance matrix for multiple phenotypes |
| construct_covmat_single | Constructing a covariance matrix for a single phenotype |
| convert_age_to_cir | Convert age to cumulative incidence rate |
| convert_age_to_thresh | Convert age to threshold |
| convert_cir_to_age | Convert cumulative incidence rate to age |
| convert_format | Attempts to convert the list entry input format to a long... |
| convert_liability_to_aoo | Convert liability to age of onset |
| convert_observed_to_liability_scale | Convert the heritability on the observed scale to that on the... |
| correct_positive_definite | Positive definite matrices |
| estimate_gen_liability_ltfh | Estimate genetic liability similar to LT-FH |
| estimate_liability | Estimating the genetic or full liability for a variable... |
| estimate_liability_multi | Estimating the genetic or full liability for multiple... |
| estimate_liability_single | Estimating the genetic or full liability |
| extract_estimation_info_graph | Title Internal Function used to extact input needed from... |
| extract_estimation_info_tbl | Title Internal Function used to extact input needed for... |
| familywise_attach_attributes | Wrapper to attach attributes to family graphs |
| familywise_censoring | Censor Family Onsets for Multiple Families |
| fixSexCoding | Fixing sex coding in trio info |
| get_all_combs | construct all combinations of input vector |
| get_covmat | Construct kinship matrix from graph |
| get_family_graphs | Automatically identify family members of degree n |
| get_onset_time | Calculate age of diagnosis, age at end of follow up, and... |
| get_relatedness | Relatedness between a pair of family members |
| Gibbs_estimator | Wrapper around the Gibbs Sampler that returns formatted... |
| graph_based_covariance_construction | Constructing covariance matrix from local family graph |
| graph_based_covariance_construction_multi | Constructing covariance matrix from local family graph for... |
| graph_to_trio | Convert from igraph to trio information |
| kendler | Title Kendler's FGRS |
| kendler_family_calculations | Title Helper function for Kendler's FGRS |
| LTFGRS-package | LTFGRS: Implementation of Several Phenotype-Based Family... |
| PA_algorithm | Title Pearson-Aitken algorithm to calculate mean values in... |
| prepare_graph | Construct graph from register information |
| prepare_thresholds | Calculate (personalised) thresholds based on CIPs. |
| rtmvnorm.gibbs | Gibbs Sampler for the truncated multivariate normal... |
| simulate_under_LTM | Simulate under the liability threshold model. |
| simulate_under_LTM_multi | Simulate under the liability threshold model (multiple... |
| simulate_under_LTM_single | Simulate under the liability threshold model (single... |
| tnorm_mean | Title: Calculate the mean of the truncated normal... |
| tnorm_mixture_conditional | Title: Calculates mean and variance of mixture of two... |
| tnorm_var | Title: Calculate the variance of the truncated normal... |
| truncated_normal_cdf | CDF for truncated normal distribution. |
