Man pages for LongDat
A Tool for 'Covariate'-Sensitive Longitudinal Analysis on 'omics' Data
| cliff_cal | Effect size (Cliff's delta) calculation in longdat_disc()... |
| ConModelTest_cont | Covariate model test in longdat_cont() pipeline |
| ConModelTest_disc | Covariate model test in longdat_disc() pipeline |
| correlation_posthoc | Post-hoc test based on correlation test for longdat_cont(). |
| cuneiform_plot | Create cuneiform plots of result table from longdat_disc() or... |
| data_preprocess | Data preprocessing |
| factor_p_cal | Calculate the p values for every factor (used for selecting... |
| final_result_summarize_cont | Generate result table as output in longdat_cont() |
| final_result_summarize_disc | Generate result table as output in longdat_disc() |
| fix_name_fun | Replace the symbols in variable and covariate names in raw... |
| longdat_cont | Longitudinal analysis with time as continuous variable |
| LongDat_cont_feature_table | data/LongDat_cont_feature_table.RData documentation |
| LongDat_cont_master_table | data/LongDat_cont_master_table.RData documentation |
| LongDat_cont_metadata_table | data/LongDat_cont_metadata_table.RData documentation |
| longdat_disc | Longitudinal analysis with time as discrete variable |
| LongDat_disc_feature_table | data/LongDat_disc_feature_table.RData documentation |
| LongDat_disc_master_table | data/LongDat_disc_master_table.RData documentation |
| LongDat_disc_metadata_table | data/LongDat_disc_metadata_table.RData documentation |
| make_master_table | Create input master table from metadata and feature tables... |
| NuModelTest_cont | Null Model Test and post-hoc Test in longdat_cont() pipeline |
| NuModelTest_disc | Null Model Test and post-hoc Test in longdat_disc() pipeline |
| random_neg_ctrl_cont | Randomized negative control for count data in longdat_cont() |
| random_neg_ctrl_disc | Randomized negative control for count data in longdat_disc() |
| rm_sparse_cont | Remove the dependent variables that are below the threshold... |
| rm_sparse_disc | Remove the dependent variables that are below the threshold... |
| theta_plot | Plot theta values of negative binomial models versus non-zero... |
| unlist_table | Unlist confound (covariate) and inverse confound (covariate)... |
| wilcox_posthoc | Wilcoxon post-hoc test |
