MAAPER: Analysis of Alternative Polyadenylation Using 3' End-Linked Reads

A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) <doi:10.1186/s13059-021-02429-5>.

Package details

AuthorWei Vivian Li [aut, cre] (<https://orcid.org/0000-0002-2087-2709>)
MaintainerWei Vivian Li <vivian.li@rutgers.edu>
LicenseGPL-3
Version1.1.1
URL https://github.com/Vivianstats/MAAPER https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02429-5
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("MAAPER")

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MAAPER documentation built on Aug. 14, 2021, 5:07 p.m.