API for MethEvolSIM
Simulate DNA Methylation Dynamics on Different Genomic Structures along Genealogies
| Global functions | |
|---|---|
| MeanSiteFChange_cherry | Man page Source code |
| categorize_islandGlbSt | Man page Source code |
| categorize_siteMethSt | Man page Source code |
| cftpStepGenerator | Man page |
| combiStructureGenerator | Man page |
| compare_CherryFreqs | Man page Source code |
| computeFitch_islandGlbSt | Man page Source code |
| compute_fitch | Man page Source code |
| compute_meanCor_i | Man page Source code |
| compute_meanCor_ni | Man page Source code |
| countSites_cherryMethDiff | Man page Source code |
| count_upm | Man page Source code |
| extract_simD | Source code |
| extract_tipD | Source code |
| freqSites_cherryMethDiff | Man page Source code |
| get_cherryDist | Man page Source code |
| get_islandMeanFreqM | Man page Source code |
| get_islandMeanFreqP | Man page Source code |
| get_islandSDFreqM | Man page Source code |
| get_islandSDFreqP | Man page Source code |
| get_meanMeth_islands | Man page Source code |
| get_nonislandMeanFreqM | Man page Source code |
| get_nonislandMeanFreqP | Man page Source code |
| get_nonislandSDFreqM | Man page Source code |
| get_nonislandSDFreqP | Man page Source code |
| get_parameterValues | Man page Source code |
| get_siteFChange_cherry | Man page Source code |
| listFreqVector_validation | Source code |
| listFreqVector_validationResults | Source code |
| listMatrices_validationResults | Source code |
| listRateMatrix_validation | Source code |
| listTransitionMatrix_validation | Source code |
| mean_CherryFreqsChange_i | Man page Source code |
| mean_TreeFreqsChange_i | Man page Source code |
| pValue_CherryFreqsChange_i | Man page Source code |
| simulate_evolData | Man page Source code |
| simulate_initialData | Man page Source code |
| singleStructureGenerator | Man page |
| split_newick | Source code |
| transPropMC_validation | Source code |
| transPropMC_validationResults | Source code |
| transform_methStateEncoding | Source code |
| treeMultiRegionSimulator | Man page |
| validate_dataAcrossTips | Man page Source code |
| validate_data_cherryDist | Man page Source code |
| validate_freqVectorSums1 | Source code |
| validate_freqVector_elements | Source code |
| validate_rate_matrix_diagonalElements | Source code |
| validate_rate_matrix_nonDiagonalElements | Source code |
| validate_rate_matrix_rowSums | Source code |
| validate_structureIndices | Man page Source code |
| validate_transPropMC | Source code |
| validate_transition_matrix_elements | Source code |
| validate_transition_matrix_rowSums | Source code |
| validate_tree | Man page Source code |
