Man pages for MiMIR
Metabolomics-Based Models for Imputing Risk
| acc_LOBOV | acc_LOBOV |
| activateButtn | activateButtn |
| Ahola_Olli_betas | T2D-score Betas |
| apply.fit | apply.fit |
| apply.fit_surro | apply.fit_surro |
| apply.scale | apply.scale |
| BBMRI_hist | BBMRI_hist |
| BBMRI_hist_plot | multi_hist |
| BBMRI_hist_scaled | BBMRI_hist_scaled |
| binarize_all_pheno | binarize_all_pheno |
| BMI_LDL_eGFR | BMI_LDL_eGFR |
| c21 | c21 |
| calculate_surrogate_scores | calculate_surrogate_scores |
| calib_data_frame | calib_data_frame |
| calibration_surro | calibration_surro |
| comp_covid_score | comp_covid_score |
| comp.CVD_score | comp.CVD_score |
| comp.mort_score | comp.mort_score |
| comp.T2D_Ahola_Olli | comp.T2D_Ahola_Olli |
| cor_assoc | cor_assoc |
| covid_betas | COVID-score betas |
| CVD_score_betas | CVD-score betas |
| do_metabowas | Helper function to compute MetaboWASs |
| find_BBMRI_names | find_BBMRI_names |
| getECE | getECE |
| getMCE | helper function to calculate the MCE of the calibrations |
| get.p | get.p |
| get.s | get.s |
| getvol | getvol |
| hist_plots | hist_plots |
| hist_plots_mortality | hist_plots_mortality |
| impute_miss | impute_miss |
| is.sym | is.sym |
| kapmeier_scores | kapmeier_scores |
| loading | withSpinner |
| loading_spin | loading_spin |
| LOBOV_accuracies | LOBOV_accuracies |
| metabolites_subsets | metabolomics feature subsets |
| metabo_names_translator | metabolomics feature nomenclatures |
| MetaboWAS | MetaboWAS |
| model_coeff_heat | model_coeff_heat |
| MOLEPI_LCBC_header | MOLEPI_LCBC_header |
| mort_betas | Mortality score betas |
| multi_hist | multi_hist |
| NA_message | NA_message |
| PARAM_metaboAge | PARAMETERS MetaboAge |
| PARAM_surrogates | PARAMETERS surrogates |
| pheno_barplots | pheno_barplots |
| phenotypes_names | phenotypic features names |
| plattCalib_evaluation | Function that plots the Platt Calibrations using plotly |
| plattCalibration | plattCalibration |
| plot_corply | plot_corply |
| plotly_NA_message | plotly_NA_message |
| plot_na_heatmap | plot_na_heatmap |
| predictions_surrogates | predictions_surrogates |
| prep_data_COVID_score | prep_data_COVID_score |
| prep_met_for_scores | prep_met_for_scores |
| QCprep | QCprep |
| QCprep_surrogates | QCprep_surrogates |
| rendertable | rendertable |
| report.dim | report.dim |
| resort.on.p | resort.on.p |
| resort.on.s | resort.on.s |
| roc_surro | roc_surro |
| roc_surro_subplots | roc_surro_subplots |
| scatterplot_predictions | scatterplot_predictions |
| startApp | startMiMIR |
| subset_metabolites_overlap | subset_metabolites_overlap |
| subset_samples_miss | subset_samples_miss |
| subset_samples_sd | subset_samples_sd |
| subset_samples_sd_surrogates | subset_samples_sd_surrogates |
| subset_samples_zero | subset_samples_miss |
| synthetic_metabolic_dataset | synthetic metabolomics dataset |
| synthetic_phenotypic_dataset | synthetic metabolomics dataset |
| ttest_scores | ttest_scores |
| ttest_surrogates | ttest_surrogates |
