Files in MixviR
Analysis and Exploration of Mixed Microbial Genomic Samples
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RGlobals.R
R/app.R
R/estimate_lineages.R
R/create_ref.R
R/id_mutations.R
R/get_codons.R
inst/doc/vignette.Rmd
inst/doc/vignette.R
inst/doc/vignette.html
inst/extdata/sample_mutations.csv
inst/extdata/example_lineage_muts_w_sublins.csv
inst/extdata/example_lineage_muts.csv
inst/extdata/example_location_date.csv
inst/extdata/vcfs/Sample1_04182021.vcf.gz
inst/extdata/vcfs/Sample2_05022021.vcf.gz
inst/extdata/vcfs/Sample3_08152021.vcf.gz
build/vignette.rds
vignettes/vignette.Rmd
man/get_codons.Rd
man/vcf_to_mixvir.Rd
man/id_snps.Rd
man/add_depths_to_ref.Rd
man/explore_mutations.Rd
man/estimate_lineages.Rd
man/create_ref.Rd
man/id_indels.Rd
man/call_mutations.Rd
