API for PathwaySpace
Spatial Projection of Network Signals along Geodesic Paths
| Global functions | |
|---|---|
| .add_contour | Source code |
| .add_grid | Source code |
| .add_image | Source code |
| .add_marks | Source code |
| .add_scaled_pdist | Source code |
| .all_binaryValues | Source code |
| .all_characterValues | Source code |
| .all_equal_fun | Source code |
| .all_integerValues | Source code |
| .all_numericValues | Source code |
| .anyOuterPx | Source code |
| .buildPathwaySpace | Source code |
| .checkStatus | Source code |
| .check_decay_args | Source code |
| .circularProjection | Source code |
| .countCavity | Source code |
| .countPxNeighbors | Source code |
| .custom_annotations | Source code |
| .custom_th0 | Source code |
| .custom_th1 | Source code |
| .custom_th2 | Source code |
| .custom_th3 | Source code |
| .custom_themes | Source code |
| .cutfloor | Source code |
| .deg2rad | Source code |
| .dilatePxEdges | Source code |
| .dledge | Source code |
| .dmKernel | Source code |
| .edge_attr | Source code |
| .edge_list | Source code |
| .edge_list_theta | Source code |
| .edge_mode | Source code |
| .edges_theta | Source code |
| .eledge | Source code |
| .erodePxEdges | Source code |
| .expandKernel | Source code |
| .expandMask | Source code |
| .expandPartitions | Source code |
| .expandPxEdges | Source code |
| .expandSeed | Source code |
| .fillCavity | Source code |
| .findBgEdges | Source code |
| .findDams | Source code |
| .findOutlines | Source code |
| .findPxEdges | Source code |
| .find_nn_positions | Source code |
| .find_summits | Source code |
| .getGrid | Source code |
| .getSidx | Source code |
| .get_configs | Source code |
| .get_delta_theta | Source code |
| .get_edge_dist | Source code |
| .get_ldfloor | Source code |
| .get_ldsig | Source code |
| .get_ldsig_polar | Source code |
| .get_mark_idx | Source code |
| .get_near_neighbours | Source code |
| .get_points_in_matrix | Source code |
| .get_signal_scale | Source code |
| .get_silhouette_dists | Source code |
| .is_color | Source code |
| .is_default_args | Source code |
| .is_numericVector | Source code |
| .is_singleColor | Source code |
| .is_singleInteger | Source code |
| .is_singleLogical | Source code |
| .is_singleNumber | Source code |
| .is_singleString | Source code |
| .is_variable | Source code |
| .kernelMask | Source code |
| .labelMask | Source code |
| .mergeSummits | Source code |
| .mode | Source code |
| .openDams | Source code |
| .openPxEdges | Source code |
| .plot_pdist | Source code |
| .polarProjection | Source code |
| .psdist | Source code |
| .pspacePalette | Source code |
| .rad2deg | Source code |
| .rdKernel | Source code |
| .reduceMask | Source code |
| .relabel | Source code |
| .relabelBySignal | Source code |
| .relabelBySize | Source code |
| .removeSilhouette | Source code |
| .removeSummits | Source code |
| .removeTips | Source code |
| .rescale_coord | Source code |
| .rescale_neg | Source code |
| .rescale_negpos | Source code |
| .rescale_pos | Source code |
| .retrive_items | Source code |
| .revise_signal | Source code |
| .revise_weights | Source code |
| .scale_alpha | Source code |
| .set_pspace | Source code |
| .set_theme_bks | Source code |
| .set_theme_zlim | Source code |
| .silhouetteCircular | Source code |
| .sqKernel | Source code |
| .summ_dsig | Source code |
| .summariseStatus | Source code |
| .summitMapping | Source code |
| .summitWatershed | Source code |
| .trimRamp | Source code |
| .trimcols | Source code |
| .updateStatus | Source code |
| .update_projections | Source code |
| .validate.args | Source code |
| .validate.colors | Source code |
| .validate.gspace | Source code |
| .validate.plot.args | Source code |
| .validate_aggregate_fun | Source code |
| .validate_decayFunction | Source code |
| .validate_ps_containers | Source code |
| .validate_signal | Source code |
| .validate_weights | Source code |
| CGC_20211118 | Man page |
| Hallmarks_v2023_1_Hs_symbols | Man page |
| PCv12_pruned_igraph | Man page |
| PathwaySpace | Man page |
| PathwaySpace-class | Man page |
| PathwaySpace-package | Man page |
| buildPathwaySpace | Man page Source code |
| circularProjection | Man page |
| circularProjection,PathwaySpace-method | Man page |
| expDecay | Man page Source code |
| gdist.toy | Man page |
| getPathwaySpace | Man page |
| getPathwaySpace,PathwaySpace-method | Man page |
| gimage | Man page |
| gs_edge_attr<- | Man page |
| gs_edge_attr<-,PathwaySpace-method | Man page |
| gs_vertex_attr<- | Man page |
| gs_vertex_attr<-,PathwaySpace-method | Man page |
| hallmarks | Man page |
| linearDecay | Man page Source code |
| pathDistances | Man page Source code |
| plotPathDistances | Man page Source code |
| plotPathwaySpace | Man page |
| plotPathwaySpace,PathwaySpace-method | Man page |
| polarProjection | Man page |
| polarProjection,PathwaySpace-method | Man page |
| pspace.cols | Man page Source code |
| signalAggregation | Man page Source code |
| signalDecay | Man page Source code |
| silhouetteMapping | Man page |
| silhouetteMapping,PathwaySpace-method | Man page |
| summitMapping | Man page |
| summitMapping,PathwaySpace-method | Man page |
| summitWatershed | Man page Source code |
| vertexDecay | Man page |
| vertexDecay,PathwaySpace-method | Man page |
| vertexDecay<- | Man page |
| vertexDecay<-,PathwaySpace-method | Man page |
| vertexSignal | Man page |
| vertexSignal,PathwaySpace-method | Man page |
| vertexSignal<- | Man page |
| vertexSignal<-,PathwaySpace-method | Man page |
| weibullDecay | Man page Source code |
