Man pages for PathwaySpace
Spatial Projection of Network Signals along Geodesic Paths
| buildPathwaySpace | Constructor of PathwaySpace-class Objects |
| CGC_20211118 | COSMIC-CGC genes mapped to PathwaySpace images |
| circularProjection-methods | Spatial Projection of Graph-Associated Signals |
| expDecay | Exponential decay function |
| getPathwaySpace-methods | Accessors for Fetching Slots from a PathwaySpace Object |
| gimage | An image matrix |
| Hallmarks_v2023_1_Hs_symbols | A list with Hallmark gene sets (v2023.1) |
| linearDecay | A simple linear decay function |
| pathDistances | Calculate a pathway space distance between two vectors |
| PathwaySpace-accessors | Accessor Functions for PathwaySpace Objects |
| PathwaySpace-class | PathwaySpace: An S4 class for signal propagation on image... |
| PathwaySpace-package | PathwaySpace: Spatial Projection of Network Signals along... |
| PCv12_pruned_igraph | A pruned and laid out igraph object from Pathway Commons V12 |
| plotPathDistances | Accessory function to plot pathway space distances |
| plotPathwaySpace-methods | Plotting 2D-landscape images for the PathwaySpace package |
| polarProjection-methods | Spatial Projection of Graph-Associated Signals |
| pspace.cols | A simple vector of colors for PathwaySpace images |
| signalAggregation | Signal aggregation functions |
| signalDecay | Signal decay functions |
| silhouetteMapping-methods | Decorating PathwaySpace Images with Graph Silhouettes |
| summitMapping-methods | Mapping Summits on PathwaySpace Images |
| summitWatershed | Variation of the watershed algorithm for summit detection |
| vertexSignal-accessors | Accessor Functions for PathwaySpace Objects |
| weibullDecay | Weibull decay function |
