Man pages for PupillometryR
A Unified Pipeline for Pupillometry Data
| baseline_data | Baseline pupil data to the average pupil size within a window |
| calculate_mean_pupil_size | Calculate a mean size across two pupils over time |
| calculate_missing_data | Calculate the missing data amount |
| clean_missing_data | Clean missing data above an acceptable threshold |
| create_difference_data | Create a difference data frame when dealing with a condition... |
| create_functional_data | Makes a functional data with splines from a... |
| create_time_windows | Make PupillometryR dataframe into multiple time windows for... |
| create_window_data | Make PupillometryR dataframe into a single collapsed window... |
| detect_blinks_by_column | detect blinks by a pre-existing labelled blink column that... |
| detect_blinks_by_size | detect blinks by a change in pupil size |
| detect_blinks_by_velocity | detect blinks by a change in velocity |
| downsample_time_data | Downsample frequency to reduce number of samples and data... |
| filter_data | Run a filter on the data to smooth it out. |
| geom_flat_violin | ggplot Flat Violin |
| GeomFlatViolin | geom_flat_violin_HELPER2 |
| gfv_helper1 | geom_flat_violin_HELPER1 |
| interpolate_data | Interpolate across the gaps in data |
| make_pupillometryr_data | Prepare data for pre-processing in PupillometryR |
| mean2 | Helper function mean2 |
| plot.Pupil_difference_data | Pre-prepared plots of PupillometryR data |
| plot.PupillometryR | Pre-prepared plots of PupillometryR data |
| plot.Pupil_test_data | Pre-prepared plots of PupillometryR data |
| plot.Pupil_window_data | Pre-prepared plots of PupillometryR data |
| pupil_data | Data collected in a pupillometry study by Sylvain Sirois |
| regress_data | Regress one pupil against another for extra smoothing |
| replace_missing_data | replaces missing observations if you have some degree of... |
| run_functional_t_test | Run a functional t-test on a dataframe previously fitted with... |
| subset_data | Subset data to provide start and finish time windows |
