RPPASPACE
Reverse-Phase Protein Array Super Position and Concentration Evaluation

Package index
Search the RPPASPACE package
Vignettes
Functions
239
Source code
24
Man pages
27
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RPPASPACE: Reverse-Phase Protein Array Super Position and Concentration Evaluation
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API

API for RPPASPACE
Reverse-Phase Protein Array Super Position and Concentration Evaluation

Global functions
.calcLogitz Source code
.calculateNoise Source code
.capwords Source code
.coef.quantile.est Source code
.computeBackgroundCutoff Source code
.createFitGraphs Source code
.dimOfLayout Source code
.ea Source code
.est.bg.noise Source code
.firstPass Source code
.fitColnames Source code
.fitSlot Source code
.generic.trim Source code
.hasScheme Source code
.isAbsolutePathname Source code
.isPackageInstalled Source code
.isProbability Source code
.locationColnames Source code
.loess.line Source code
.mergeGraphsAndImage Source code
.mkPlotTitle Source code
.onAttach Source code
.onLoad Source code
.pkgRversion Source code
.plotProbabilityOfGoodSlide Source code
.portableFilename Source code
.predict.spline Source code
.series.fit Source code
.slide.model Source code
.totitle Source code
.validate.classname Source code
.validate.envir Source code
.validate.key Source code
.validate.method Source code
CobsFitClass-class Man page
DS5RPPAPreFitQC Source code
DS5RPPAPreFitQC-class Man page
Directory Man page Source code
Directory-class Man page
FitClass-class Man page
LoessFitClass-class Man page
LogisticFitClass-class Man page
RPPA Man page Source code
RPPA-class Man page
RPPADesignParams Man page Source code
RPPADesignParams-class Man page
RPPAFit Man page Source code
RPPAFit-class Man page
RPPAFitFromParams Man page Source code
RPPAFitParams Man page Source code
RPPAFitParams-class Man page
RPPANormalizationParams Man page Source code
RPPANormalizationParams-class Man page
RPPAPreFitQC Man page Source code
RPPAPreFitQC-class Man page
RPPASPACE-package Man page
RPPASPACESettings Man page Source code
RPPASPACESettings-class Man page
RPPASet Man page Source code
RPPASet-class Man page
RPPASetSummary Man page Source code
RPPASetSummary-class Man page
RPPASpatialParams Man page Source code
RPPASpatialParams-class Man page
coef,FitClass-method Man page
coef,LogisticFitClass-method Man page
coef,RPPAFit-method Man page
coefficients,FitClass-method Man page
coefficients,LogisticFitClass-method Man page
coefficients,RPPAFit-method Man page
coerce,Directory,character-method Man page
coerce,character,Directory-method Man page
createTracking Source code
dim,RPPA-method Man page
dir.exists Source code
dir.writable Source code
doQcDataPrefit Source code
doSpatiallyAdjustSlide Source code
dofitSlide Source code
fitCurveAndSummarizeFromSettings Man page Source code
fitSeries,CobsFitClass-method Man page
fitSeries,FitClass-method Man page
fitSeries,LoessFitClass-method Man page
fitSeries,LogisticFitClass-method Man page
fitSlide,CobsFitClass-method Man page
fitSlide,FitClass-method Man page
fitSlide,LoessFitClass-method Man page
fitSlide,LogisticFitClass-method Man page
fitted,CobsFitClass-method Man page
fitted,FitClass-method Man page
fitted,LoessFitClass-method Man page
fitted,LogisticFitClass-method Man page
fitted,RPPAFit-method Man page
getConfidenceInterval Man page Source code
getPrerequisitePackages Source code
getRegisteredMethod Man page Source code
getRegisteredMethodKeys Man page
getRegisteredModel Man page Source code
getRegisteredModelKeys Man page Source code
getRegisteredModelLabel Man page Source code
getRegisteredNormalizationMethod Man page Source code
getRegisteredNormalizationMethodKeys Man page Source code
getRegisteredNormalizationMethodLabel Man page Source code
getRegisteredObject Man page Source code
getRegisteredObjectKeys Man page Source code
getStages Source code
hist,RPPAFit-method Man page
image,RPPA-method Man page
image,RPPAFit-method Man page
is.Directory Man page Source code
is.FitClass Man page Source code
is.RPPA Man page Source code
is.RPPADesignParams Man page Source code
is.RPPAFit Man page Source code
is.RPPAFitParams Man page Source code
is.RPPANormalizationParams Man page Source code
is.RPPAPreFitQC Man page Source code
is.RPPASPACESettings Man page Source code
is.RPPASet Man page Source code
is.RPPASetSummary Man page Source code
is.RPPASpatialParams Man page Source code
mkNumericHandlerMethod Source code
modelenv Source code
normalize Man page
normalize,ANY-method Man page
normalize,MatrixLike-method Man page
normalize,NULL-method Man page
normalize,RPPASet-method Man page
normalize-method Man page
normalize.house Source code
normalize.median Source code
normalize.medpolish Source code
normalize.none Source code
normalize.vs Source code
normenv Source code
packaged Source code
paramString Man page
paramString,ANY-method Man page
paramString,RPPADesignParams-method Man page
paramString,RPPAFitParams-method Man page
paramString,RPPANormalizationParams-method Man page
paramString,RPPASPACESettings-method Man page
paramString,RPPASpatialParams-method Man page
paramString-method Man page
pathname Source code
plot,RPPA,ANY-method Man page
plot,RPPA-method Man page
plot,RPPADesignParams-method Man page
plot,RPPAFit,missing-method Man page
qcprob Man page
qcprob,ANY-method Man page
qcprob,DS5RPPAPreFitQC-method Man page
qcprob,NULL-method Man page
qcprob,RPPAPreFitQC-method Man page
qcprob-method Man page
ran.prefitqc Source code
readQuantification Source code
registerClassname Man page Source code
registerMethod Man page Source code
registerModel Man page Source code
registerNormalizationMethod Man page Source code
registerPkgFitModels Source code
registerPkgNormalizationMethods Source code
resid,RPPAFit-method Man page
residuals,RPPAFit-method Man page
rotateMatrix Source code Source code
rotateMatrixClockwise90Degrees Source code
rotateMatrixRight Source code
rppaNormalize Source code
seriesNames Man page Source code
seriesToUseToMakeCurve Man page Source code
slot.all.equal Source code
spatialAdjustment Man page Source code
spatialAdjustmentFromParams Man page Source code
spatialCorrection Man page Source code
summary,DS5RPPAPreFitQC-method Man page
summary,RPPA-method Man page
summary,RPPAFit-method Man page
summary,RPPAPreFitQC-method Man page
summary,RPPASet-method Man page
trimConc,CobsFitClass-method Man page
trimConc,FitClass-method Man page
trimConc,LoessFitClass-method Man page
trimConc,LogisticFitClass-method Man page
validDirectory Source code
validRPPANormalizationParams Source code
validRPPASPACESettings Source code
validSpatialParams Source code
write.summary Man page
write.summary,ANY-method Man page
write.summary,RPPASPACESettings-method Man page
write.summary,RPPASet-method Man page
write.summary,RPPASetSummary-method Man page
write.summary-method Man page
RPPASPACE documentation built on Oct. 20, 2023, 1:08 a.m.

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