Rtapas: Random Tanglegram Partitions

Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See Llaberia-Robledillo et al., (2023) <doi:10.1093/sysbio/syad016>.

Getting started

Package details

AuthorMar Llaberia-Robledillo [aut, cre, cph] (<https://orcid.org/0000-0002-7989-796X>), Juan A. Balbuena [aut, cph] (<https://orcid.org/0000-0003-4006-1353>), José Ignacio Lucas-Lledó [aut, cph] (<https://orcid.org/0000-0001-6254-8942>), Oscar Alejandro Pérez-Escobar [aut, cph] (<https://orcid.org/0000-0001-9166-2410>)
MaintainerMar Llaberia-Robledillo <mar.llaberia@uv.es>
LicenseMIT + file LICENSE
Version1.2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("Rtapas")

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Rtapas documentation built on June 22, 2024, 10:47 a.m.