Nothing
SCORPION: Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks
Constructs cell-type–specific gene regulatory networks from single-cell RNA-sequencing data. The method implements the SCORPION algorithm, which first aggregates individual cells into supercells and then applies PANDA (Passing Attributes between Networks for Data Assimilation) to infer transcription factor–target regulatory relationships. It also provides statistical methods for differential edge analysis.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Daniel Osorio [aut, cre] (ORCID: <https://orcid.org/0000-0003-4424-8422>), Marieke L. Kuijjer [aut] (ORCID: <https://orcid.org/0000-0001-6280-3130>) |
| Maintainer | Daniel Osorio <daniecos@uio.no> |
| License | GPL-3 |
| Version | 1.3.1 |
| URL | https://github.com/kuijjerlab/SCORPION |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
|
Try the SCORPION package in your browser
Any scripts or data that you put into this service are public.
