SMASH: Subclone Multiplicity Allocation and Somatic Heterogeneity

Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of number of subclones, multiplicity, and allocation (Little et al. (2019) <doi:10.1186/s13073-019-0643-9>).

Getting started

Package details

AuthorPaul Little [aut, cre]
MaintainerPaul Little <pllittle321@gmail.com>
LicenseGPL (>= 3)
Version1.0.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SMASH")

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SMASH documentation built on April 4, 2025, 2:31 a.m.