Files in TDApplied
Machine Learning and Inference for Topological Data Analysis
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/analyze_representatives.R
R/utilities.R
R/distance_calculations.R
R/inference.R
R/TDApplied-package.R
R/plot.R
R/python_functions.R
R/machine_learning.R
R/convert.R
R/bootstrap.R
R/zzz.R
R/enclosing_rad.R
R/kernel_calculations.R
R/rips_complexes.R
src/matrix.h
src/kd_fix_rad_search.cpp
src/Makevars.win
src/brute.cpp
src/kd_split.cpp
src/kd_fix_rad_search.h
src/bd_tree.h
src/KCenterClustering.cpp
src/KCenterClustering.h
src/RcppExports.cpp
src/bd_pr_search.cpp
src/kd_dump.cpp
src/ANN.h
src/bd_tree.cpp
src/pr_queue.h
src/bd_search.cpp
src/figtree.h
src/ANN.cpp
src/kd_tree.h
src/figtree_internal.h
src/bd_fix_rad_search.cpp
src/kd_search.h
src/kd_tree.cpp
src/ANNperf.h
src/kd_util.cpp
src/ANNx.h
src/kd_split.h
src/kd_pr_search.h
src/kd_search.cpp
src/perf.cpp
src/pr_queue_k.h
src/kd_pr_search.cpp
src/kd_util.h
src/figtree.cpp
inst/doc/ML_and_Inference.Rmd
inst/doc/comparing_calcs.Rmd
inst/doc/comparing_calcs.html
inst/doc/ML_and_Inference.R
inst/doc/HCP_analysis.Rmd
inst/doc/comparing_calcs.R
inst/doc/personalized_analyses.Rmd
inst/doc/Speed.R
inst/doc/HCP_analysis.R
inst/doc/personalized_analyses.R
inst/doc/ML_and_Inference.html
inst/doc/HCP_analysis.html
inst/doc/personalized_analyses.html
inst/doc/Speed.Rmd
inst/doc/Speed.html
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-distance.R
tests/testthat/test-MDS.R
tests/testthat/test-kmeans.R
tests/testthat/test-enclosing.R
tests/testthat/test-bootstrap.R
tests/testthat/test-plot.R
tests/testthat/test-python.R
tests/testthat/test-pca.R
tests/testthat/test-representatives.R
tests/testthat/test-convert.R
tests/testthat/test-utilities.R
tests/testthat/test-inference.R
tests/testthat/test-rips.R
tests/testthat/test-kernel.R
tests/testthat/test-svm.R
vignettes/thresh.rds
vignettes/ML_and_Inference.Rmd
vignettes/comparing_calcs.Rmd
vignettes/r_face.rds
vignettes/theta_nodes.png
vignettes/cols_time_since_last_block.rds
vignettes/r_nodes.png
vignettes/cols.rds
vignettes/r_shape.rds
vignettes/rips_all.rds
vignettes/cols_respiratory.rds
vignettes/rips_secondary.rds
vignettes/REFERENCES.bib
vignettes/HCP_analysis.Rmd
vignettes/personalized_analyses.Rmd
vignettes/shape_rt.rds
vignettes/emb.rds
vignettes/Speed.Rmd
vignettes/rips_cycle.rds
exec/benchmarking_and_vignette_figures.R
exec/TDApplied_HCP.R
exec/parallel_with_approximation.R
man/predict_diagram_kpca.Rd
man/plot_diagram.Rd
man/check_ripser.Rd
man/predict_diagram_kkmeans.Rd
man/distance_matrix.Rd
man/import_ripser.Rd
man/diagram_distance.Rd
man/check_PyH_setup.Rd
man/enclosing_radius.Rd
man/diagram_kpca.Rd
man/permutation_model_inference.Rd
man/gram_matrix.Rd
man/TDApplied-package.Rd
man/bootstrap_persistence_thresholds.Rd
man/diagram_mds.Rd
man/universal_null.Rd
man/diagram_ksvm.Rd
man/plot_vr_graph.Rd
man/vr_graphs.Rd
man/permutation_test.Rd
man/predict_diagram_ksvm.Rd
man/diagram_kernel.Rd
man/diagram_kkmeans.Rd
man/loss.Rd
man/PyH.Rd
man/diagram_to_df.Rd
man/analyze_representatives.Rd
man/independence_test.Rd
