Man pages for VarfromPDB
Disease-Gene-Variant Relations Mining from the Public Databases and Literature
| aa | a table of Codon-Amino Acid Abbreviations |
| extract_clinvar | Extract the genes and variants related to a genetic disorder... |
| extract_genes_orphanet | Extract the genes related to a genetic disorder from Orphanet |
| extract_omim | Extract the genes and variants related to a genetic disorder... |
| extract_pubmed | Extract the genes and variants related to a genetic disorder... |
| extract_uniprot | Extract the genes and variants related to a genetic disorder... |
| genes_add_pubmed | Compile the disease-related genes from PubMed abstracts into... |
| genes_compile | Compile the disease-related genes from multiple public... |
| grep_split | Extention for grep function |
| localPDB | Localize the public databases including HPO, MedGen,... |
| pheno_extract_HPO | Extract the genes related to a disease or disease alias from... |
| variants_compile | Compile the disease-related variants from multiple public... |
