Man pages for Virusparies
Visualize and Process Output from 'VirusHunterGatherer'
| CombineHittables | CombineHittables: Combine hittables. |
| ExportVirusDataFrame | ExportVirusDataFrame: Export processed hittables and summary... |
| ExportVirusGt | ExportVirusGt: (Experimental) Export Graphical Tables |
| ExportVirusPlot | Export Virusparies Plots |
| get_plot_parameters | Internal function to set default title and cutoff in boxplot... |
| ImportVirusTable | ImportVirusTable: Import VirusHunterGatherer hittables into R |
| SummarizeViralStats | SummarizeViralStats: Generate summary stats outside of plot... |
| VgConLenViolin | VgConLenViolin: Generate a Violinplot of contig length for... |
| VhgAddPhylum | VhgAddPhylum: extract Phylum information |
| VhgBoxplot | VhgBoxplot: Generate box plots comparing E-values,identity or... |
| VhgGetSubject | VhgGetSubject: Process and Count Viral Subjects within Groups |
| VhgIdenFacetedScatterPlot | VhgIdenFacetedScatterPlot: Create a scatter plot of Viral... |
| VhgIdentityScatterPlot | VhgIdentityScatterPlot: Scatter plot for refseq identity vs... |
| VhgPreprocessTaxa | VhgPreprocessTaxa: preprocess ViralRefSeq_taxonomy elements |
| VhgRunsBarplot | VhgRunsBarplot: Generate a bar plot showing the number of... |
| VhgRunsTable | VhgRunsTable: Generate a gt summary table of unique runs for... |
| VhgSubsetHittable | VhgSubsetHittable: Filter VirusHunter and VirusGatherer... |
| VhgSumHitsBarplot | VhgSumHitsBarplot: Generate a bar plot showing the sum of... |
| VhgTabularRasa | VhgTabularRasa: Generate Custom Formatted Graphical Tables |
| Virusparies | Virusparies Package |
