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WhiteLabRt: Novel Methods for Reproduction Number Estimation, Back-Calculation, and Forecasting
A collection of functions related to novel methods for estimating R(t), created by the lab of Professor Laura White. Currently implemented methods include two-step Bayesian back-calculation and now-casting for line-list data with missing reporting delays, adapted in 'STAN' from Li (2021) <doi:10.1371/journal.pcbi.1009210>, and calculation of time-varying reproduction number assuming a flux between various adjacent states, adapted into 'STAN' from Zhou (2021) <doi:10.1371/journal.pcbi.1010434>.
Getting started
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Package details |
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| Author | Chad Milando [aut, cre], Tenglong Li [ctb], Zhenwei Zhou [ctb], Laura White [ctb] |
| Maintainer | Chad Milando <cmilando@bu.edu> |
| License | MIT + file LICENSE |
| Version | 1.0.1 |
| Package repository | View on CRAN |
| Installation |
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