API for aPEAR
Advanced Pathway Enrichment Analysis Representation
| Global functions | |
|---|---|
| .plotNodesAndEdges | Source code |
| aPEAR | Man page |
| aPEAR-package | Man page |
| aPEAR.methods | Man page |
| aPEAR.theme | Man page |
| clusterName | Source code |
| correlation | Source code |
| cosine | Source code |
| detectEnrichment | Source code |
| emptyMatrix | Source code |
| enrichmentGraph | Source code |
| enrichmentNetwork | Man page Source code |
| expand_x_axis | Source code |
| expand_y_axis | Source code |
| findPathClusters | Man page Source code |
| geom_cluster_colors | Source code |
| geom_cluster_labels | Source code |
| hierarchical | Source code |
| hits | Source code |
| jaccard | Source code |
| markov | Source code |
| occurenceMatrix | Source code |
| pagerank | Source code |
| pathwayClusters | Source code |
| plotPathClusters | Man page Source code |
| prepareEnrichment | Source code |
| prepareMethods | Source code |
| prepareTheme | Source code |
| selectClusterName | Source code |
| similarity | Source code |
| spectral | Source code |
