Files in adelie
Group Lasso and Elastic Net Solver for Generalized Linear Models
MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/adelie-package.R
R/solver.R
R/utilities.R
R/constraints.R
R/state.R
R/wrappers.R
R/onAttach.R
R/configs.R
R/matrix.R
R/glm.R
R/io.R
R/glintnet.R
src/rcpp_matrix.h
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/rcpp_matrix_utils_blas.cpp
src/rcpp_state.h
src/rcpp_constraint.cpp
src/rcpp_configs.cpp
src/rcpp_solver.cpp
src/rcpp_io.cpp
src/rcpp_constraint.h
src/rcpp_glm.h
src/utils.h
src/rcpp_state.cpp
src/rcpp_matrix.cpp
src/rcpp_io.h
src/decl.h
src/rcpp_glm.cpp
inst/doc/adelie.R
inst/doc/adelie.html
inst/doc/adelie.Rmd
inst/adelie/adelie/cv.py
inst/adelie/adelie/solver.py
inst/adelie/adelie/matrix.py
inst/adelie/adelie/io.py
inst/adelie/adelie/logger.py
inst/adelie/adelie/data.py
inst/adelie/adelie/optimization.py
inst/adelie/adelie/glm.py
inst/adelie/adelie/__init__.py
inst/adelie/adelie/state.py
inst/adelie/adelie/constraint.py
inst/adelie/adelie/sklearn.py
inst/adelie/adelie/bcd.py
inst/adelie/adelie/diagnostic.py
inst/adelie/adelie/configs.py
inst/adelie/adelie/src/py_configs.cpp
inst/adelie/adelie/src/py_constraint.cpp
inst/adelie/adelie/src/py_matrix_utils.cpp
inst/adelie/adelie/src/py_matrix.cpp
inst/adelie/adelie/src/py_solver.cpp
inst/adelie/adelie/src/py_optimization.cpp
inst/adelie/adelie/src/py_sklearn.cpp
inst/adelie/adelie/src/py_state.cpp
inst/adelie/adelie/src/py_decl.hpp
inst/adelie/adelie/src/py_glm.cpp
inst/adelie/adelie/src/py_adelie_core.cpp
inst/adelie/adelie/src/py_bcd.cpp
inst/adelie/adelie/src/py_io.cpp
inst/adelie/adelie/src/py_matrix_utils_blas.cpp
inst/adelie/adelie/src/include/adelie_core/configs.hpp
inst/adelie/adelie/src/include/adelie_core/io/io_snp_phased_ancestry.hpp
inst/adelie/adelie/src/include/adelie_core/io/io_snp_unphased.hpp
inst/adelie/adelie/src/include/adelie_core/io/io_snp_phased_ancestry.ipp
inst/adelie/adelie/src/include/adelie_core/io/utils.hpp
inst/adelie/adelie/src/include/adelie_core/io/io_snp_base.hpp
inst/adelie/adelie/src/include/adelie_core/io/io_snp_unphased.ipp
inst/adelie/adelie/src/include/adelie_core/io/io_snp_base.ipp
inst/adelie/adelie/src/include/adelie_core/solver/solver_base.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_multigaussian_naive.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_cov.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_pin_naive.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_css_cov.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_pin_base.hpp
inst/adelie/adelie/src/include/adelie_core/solver/utils.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_bvls.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_naive.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_pin_cov.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_multiglm_naive.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_glm_naive.hpp
inst/adelie/adelie/src/include/adelie_core/solver/solver_pinball.hpp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_linear.ipp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_base.ipp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_base.hpp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_linear.hpp
inst/adelie/adelie/src/include/adelie_core/constraint/utils.hpp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_box.hpp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_one_sided.hpp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_one_sided.ipp
inst/adelie/adelie/src/include/adelie_core/constraint/constraint_box.ipp
inst/adelie/adelie/src/include/adelie_core/util/algorithm.hpp
inst/adelie/adelie/src/include/adelie_core/util/tqdm.hpp
inst/adelie/adelie/src/include/adelie_core/util/functional.hpp
inst/adelie/adelie/src/include/adelie_core/util/exceptions.hpp
inst/adelie/adelie/src/include/adelie_core/util/queue.hpp
inst/adelie/adelie/src/include/adelie_core/util/omp.hpp
inst/adelie/adelie/src/include/adelie_core/util/types.hpp
inst/adelie/adelie/src/include/adelie_core/util/format.hpp
inst/adelie/adelie/src/include/adelie_core/util/stopwatch.hpp
inst/adelie/adelie/src/include/adelie_core/util/counting_iterator.hpp
inst/adelie/adelie/src/include/adelie_core/util/macros.hpp
inst/adelie/adelie/src/include/adelie_core/util/eigen/map_sparsevector.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_css_cov.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_pin_cov.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_cov.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_bvls.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_pinball.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_pin_base.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_pin_naive.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_pinball.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_pin_base.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_naive.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_multigaussian_naive.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_pin_cov.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_glm_naive.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_css_cov.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_base.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_multigaussian_naive.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_glm_naive.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_base.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_multiglm_naive.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_naive.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_bvls.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_pin_naive.ipp
inst/adelie/adelie/src/include/adelie_core/state/state_multiglm_naive.hpp
inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_cov.hpp
inst/adelie/adelie/src/include/adelie_core/bcd/utils.hpp
inst/adelie/adelie/src/include/adelie_core/bcd/unconstrained/newton.hpp
inst/adelie/adelie/src/include/adelie_core/bcd/unconstrained/ista.hpp
inst/adelie/adelie/src/include/adelie_core/bcd/unconstrained/brent.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_poisson.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_base.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_gaussian.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_multigaussian.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_multibase.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_binomial.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_cox.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_base.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_cox.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_multinomial.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_gaussian.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_binomial.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_multigaussian.hpp
inst/adelie/adelie/src/include/adelie_core/glm/glm_multibase.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_poisson.ipp
inst/adelie/adelie/src/include/adelie_core/glm/glm_multinomial.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_block_diag.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_subset.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_unphased.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_dense.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_subset.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_sparse.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_interaction.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_sparse.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_constraint_base.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_convex_relu.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_dense.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_sparse.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_convex_gated_relu.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_block_diag.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_base.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_phased_ancestry.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_unphased.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_dense.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_constraint_sparse.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_lazy_cov.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_kronecker_eye.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_convex_relu.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_one_hot.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/utils.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_lazy_cov.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_dense.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_kronecker_eye.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_phased_ancestry.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_constraint_base.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_base.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_block_diag.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_standardize.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_one_hot.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_base.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_constraint_dense.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_constraint_sparse.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_interaction.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_convex_gated_relu.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_standardize.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_block_diag.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_sparse.ipp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_cov_base.hpp
inst/adelie/adelie/src/include/adelie_core/matrix/matrix_constraint_dense.ipp
inst/adelie/adelie/src/include/adelie_core/optimization/symmetric_penalty.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/newton.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/search_pivot.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/nnls.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/bisect.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/lasso_full.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/pinball_full.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/linqp_full.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/nnqp_full.hpp
inst/adelie/adelie/src/include/adelie_core/optimization/pinball.hpp
inst/adelie/adelie/src/src/io/io.hpp
inst/adelie/adelie/src/src/io/io_snp_unphased.cpp
inst/adelie/adelie/src/src/io/io_snp_base.cpp
inst/adelie/adelie/src/src/io/io_snp_phased_ancestry.cpp
inst/adelie/adelie/src/src/constraint/constraint_one_sided.cpp
inst/adelie/adelie/src/src/constraint/constraint_base.cpp
inst/adelie/adelie/src/src/constraint/constraint.hpp
inst/adelie/adelie/src/src/constraint/constraint_linear.cpp
inst/adelie/adelie/src/src/constraint/constraint_box.cpp
inst/adelie/adelie/src/src/state/state.hpp
inst/adelie/adelie/src/src/state/state_multigaussian_naive.cpp
inst/adelie/adelie/src/src/state/state_base.cpp
inst/adelie/adelie/src/src/state/state_pinball.cpp
inst/adelie/adelie/src/src/state/state_multiglm_naive.cpp
inst/adelie/adelie/src/src/state/state_gaussian_pin_base.cpp
inst/adelie/adelie/src/src/state/state_css_cov.cpp
inst/adelie/adelie/src/src/state/state_gaussian_pin_naive.cpp
inst/adelie/adelie/src/src/state/state_bvls.cpp
inst/adelie/adelie/src/src/state/state_gaussian_cov.cpp
inst/adelie/adelie/src/src/state/state_gaussian_naive.cpp
inst/adelie/adelie/src/src/state/state_gaussian_pin_cov.cpp
inst/adelie/adelie/src/src/state/state_glm_naive.cpp
inst/adelie/adelie/src/src/glm/glm_base.cpp
inst/adelie/adelie/src/src/glm/glm_poisson.cpp
inst/adelie/adelie/src/src/glm/glm_gaussian.cpp
inst/adelie/adelie/src/src/glm/glm.hpp
inst/adelie/adelie/src/src/glm/glm_multibase.cpp
inst/adelie/adelie/src/src/glm/glm_cox.cpp
inst/adelie/adelie/src/src/glm/glm_multigaussian.cpp
inst/adelie/adelie/src/src/glm/glm_binomial.cpp
inst/adelie/adelie/src/src/glm/glm_multinomial.cpp
inst/adelie/adelie/src/src/tools/eigen_wrap.hpp
inst/adelie/adelie/src/src/tools/types.hpp
inst/adelie/adelie/src/src/matrix/matrix_constraint_base.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_interaction.cpp
inst/adelie/adelie/src/src/matrix/matrix_cov_base.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_dense.cpp
inst/adelie/adelie/src/src/matrix/matrix_cov_dense.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_subset.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_snp_unphased.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_sparse.cpp
inst/adelie/adelie/src/src/matrix/matrix.hpp
inst/adelie/adelie/src/src/matrix/matrix_naive_kronecker_eye.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_concatenate.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_standardize.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_base.cpp
inst/adelie/adelie/src/src/matrix/matrix_cov_lazy_cov.cpp
inst/adelie/adelie/src/src/matrix/matrix_cov_sparse.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_convex_relu.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_snp_phased_ancestry.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_one_hot.cpp
inst/adelie/adelie/src/src/matrix/matrix_cov_block_diag.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_block_diag.cpp
inst/adelie/adelie/src/src/matrix/matrix_constraint_sparse.cpp
inst/adelie/adelie/src/src/matrix/matrix_naive_convex_gated_relu.cpp
inst/adelie/adelie/src/src/matrix/matrix_constraint_dense.cpp
build/vignette.rds
build/partial.rdb
vignettes/adelie.Rmd
vignettes/assets/grpnet_refs.bib
man/matrix.sparse.Rd
man/grpnet.Rd
man/glm.multigaussian.Rd
man/matrix.kronecker_eye.Rd
man/predict.grpnet.Rd
man/matrix.lazy_cov.Rd
man/glm.binomial.Rd
man/gaussian_cov.Rd
man/glintnet.Rd
man/io.snp_phased_ancestry.Rd
man/glm.cox.Rd
man/predict.cv.grpnet.Rd
man/matrix.standardize.Rd
man/print.cv.grpnet.Rd
man/matrix.block_diag.Rd
man/matrix.interaction.Rd
man/matrix.eager_cov.Rd
man/print.grpnet.Rd
man/plot.grpnet.Rd
man/matrix.subset.Rd
man/set_configs.Rd
man/cv.glintnet.Rd
man/cv.grpnet.Rd
man/matrix.dense.Rd
man/matrix.one_hot.Rd
man/glm.multinomial.Rd
man/predict.cv.glintnet.Rd
man/glm.poisson.Rd
man/plot.cv.grpnet.Rd
man/matrix.convex_relu.Rd
man/constraint.box.Rd
man/glm.gaussian.Rd
man/matrix.concatenate.Rd
man/io.snp_unphased.Rd
man/print.glintnet.Rd
man/matrix.snp_phased_ancestry.Rd
man/matrix.snp_unphased.Rd
man/predict.glintnet.Rd
