Files in bioLeak

Leakage-Safe Modeling and Auditing for Genomic and Clinical Data

NEWS.md README.md R/provenance.R R/utils_metrics.R R/tidymodels.R R/audit.R R/summary.R R/simulate_suite.R R/time_series_blocks.R R/guard_to_recipe.R R/cvauc_if.R R/classes.R R/conditions.R R/ci_delta.R R/audit_report.R R/diagnostics_extra.R R/make_split_plan.R R/tune_resample.R R/fit_resample.R R/plotting_audit.R R/benchmark_suite.R R/utils_se.R R/guards.R R/permute_labels.R R/impute_guarded.R R/utils_print.R R/globals.R R/imports.R R/cv_uncertainty.R inst/doc/bioLeak-intro.R inst/doc/bioLeak-intro.Rmd inst/reports/audit_report.Rmd tests/testthat.R tests/testthat/test-cv-uncertainty.R tests/testthat/test-make-split-plan-modes.R tests/testthat/test-make-split-plan-edge.R tests/testthat/test-combined-splits.R tests/testthat/test-provenance.R tests/testthat/test-simulate-signal-strength.R tests/testthat/test-guard-to-recipe.R tests/testthat/test-condition-classes.R tests/testthat/test-audit-report-expanded.R tests/testthat/test-invariants.R tests/testthat/test-diagnostics-polish.R tests/testthat/test-utils-se.R tests/testthat/test-audit-leakage-edge.R tests/testthat/helper-fixtures.R tests/testthat/test-audit-report.R tests/testthat/test-simulate-suite.R tests/testthat/helper-load.R tests/testthat/test-plotting.R tests/testthat/test-benchmark-suite.R tests/testthat/test-impute-guarded.R tests/testthat/test-classes-summary.R tests/testthat/test-task-expansion.R tests/testthat/test-time-series-blocks.R tests/testthat/test-failure-mode-messaging.R tests/testthat/test-audit-helpers.R tests/testthat/test-check-split-overlap.R tests/testthat/test-permute-labels.R tests/testthat/test-fit-resample-custom-learner.R tests/testthat/test-scalability-threshold.R tests/testthat/test-tidymodels-interop.R tests/testthat/test-strict-mode.R tests/testthat/test-ci-delta-cvauc.R tests/testthat/test-audit-diagnostics.R tests/testthat/test-utils-metrics.R tests/testthat/test-make-split-plan-compact.R tests/testthat/test-fit-resample-edge.R tests/testthat/test-n-axis-constraints.R tests/testthat/test-validation-policy.R tests/testthat/test-guard-fit.R tests/testthat/test-tune-resample.R tests/testthat/test-guards-utils.R tests/testthat/fixtures/README.md vignettes/bioLeak-intro.Rmd man/plot_time_acf.Rd man/dot-nb_corrected_var.Rd man/show-LeakSplits-method.Rd man/cv_ci.Rd man/audit_leakage_by_learner.Rd man/tune_resample.Rd man/dot-guard_ensure_levels.Rd man/audit_leakage.Rd man/summary.LeakAudit.Rd man/dot-permute_labels_factory.Rd man/benchmark_leakage_suite.Rd man/audit_report.Rd man/dot-quantile_break_cache.Rd man/plot_confounder_sensitivity.Rd man/plot_overlap_checks.Rd man/fit_resample.Rd man/plot_calibration.Rd man/dot-stationary_bootstrap.Rd man/dot-circular_block_permute.Rd man/check_split_overlap.Rd man/summary.LeakTune.Rd man/dot-guard_fit.Rd man/plot_perm_distribution.Rd man/simulate_leakage_suite.Rd man/summary.LeakFit.Rd man/confounder_sensitivity.Rd man/make_split_plan.Rd man/impute_guarded.Rd man/plot_fold_balance.Rd man/dot-bio_capture_provenance.Rd man/LeakClasses.Rd man/as_rsample.Rd man/calibration_summary.Rd man/guard_to_recipe.Rd man/predict_guard.Rd