Man pages for bioLeak
Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
| as_rsample | Convert LeakSplits to an rsample resample set |
| audit_leakage | Audit leakage and confounding |
| audit_leakage_by_learner | Audit leakage per learner |
| audit_report | Render an HTML audit report |
| benchmark_leakage_suite | Simulation benchmark matrix for leakage diagnostics |
| calibration_summary | Calibration diagnostics for binomial predictions |
| check_split_overlap | Check split overlap invariants |
| confounder_sensitivity | Confounder sensitivity summaries |
| cv_ci | Confidence intervals for cross-validated metrics |
| dot-bio_capture_provenance | Capture session provenance information |
| dot-circular_block_permute | Circular block permutation indices |
| dot-guard_ensure_levels | Ensure consistent categorical levels for guarded... |
| dot-guard_fit | Fit leakage-safe preprocessing pipeline |
| dot-nb_corrected_var | Nadeau-Bengio corrected variance |
| dot-permute_labels_factory | Restricted permutation label factory |
| dot-quantile_break_cache | Quantile break cache for permutation stratification |
| dot-stationary_bootstrap | Stationary bootstrap indices |
| fit_resample | Fit and evaluate with leakage guards over predefined splits |
| guard_to_recipe | Convert guard preprocessing steps to a recipes recipe |
| impute_guarded | Leakage-safe data imputation via guarded preprocessing |
| LeakClasses | S4 Classes for bioLeak Pipeline |
| make_split_plan | Create leakage-resistant splits |
| plot_calibration | Plot calibration curve for binomial predictions |
| plot_confounder_sensitivity | Plot confounder sensitivity |
| plot_fold_balance | Plot fold balance of class counts per fold |
| plot_overlap_checks | Plot overlap diagnostics between train/test groups |
| plot_perm_distribution | Plot permutation distribution for a LeakAudit object |
| plot_time_acf | Plot ACF of test predictions for time-series leakage checks |
| predict_guard | Apply a fitted GuardFit transformer to new data |
| show-LeakSplits-method | Display summary for LeakSplits objects |
| simulate_leakage_suite | Simulate leakage scenarios and audit results |
| summary.LeakAudit | Summarize a leakage audit |
| summary.LeakFit | Summarize a LeakFit object |
| summary.LeakTune | Summarize a nested tuning result |
| tune_resample | Leakage-aware nested tuning with tidymodels |
