| allele_counter | Run alleleCount |
| appmamba | Manage Environment with 'micromamba' |
| arg | Deliver arguments of command |
| blit-package | blit: Bioinformatics Library for Integrated Tools |
| cellranger | Run cellranger |
| cmd_on_start | Schedule expressions to run |
| cmd_parallel | Execute a list of commands |
| cmd_run | Execute command |
| cmd_wd | Setup the context for the command |
| Command | R6 Class to prepare command parameters. |
| conda | Run conda |
| exec | Invoke a System Command |
| fastq_pair | FASTQ PAIR |
| gistic2 | Run GISTIC2 |
| kraken2 | Running Kraken2 |
| kraken_tools | KrakenTools is a suite of scripts to be used alongside the... |
| make_command | Helper function to create new command. |
| perl | Perl is a highly capable, feature-rich programming language... |
| pyscenic | Run pyscenic |
| python | Python is a programming language that lets you work quickly... |
| samtools | Python is a programming language that lets you work quickly... |
| seqkit | Run seqkit |
| trust4 | TRUST4: immune repertoire reconstruction from bulk and... |
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