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cfr: Estimate Disease Severity and Case Ascertainment
Estimate the severity of a disease and ascertainment of cases, as discussed in Nishiura et al. (2009) <doi:10.1371/journal.pone.0006852>.
Getting started
Package overview
README.md
A primer on working with delay distributions
Calculating a static, delay-adjusted estimate of disease severity
Estimating disease severity while correcting for reporting delays
Estimating fatality risk from individual level data
Estimating how disease severity varies over the course of an outbreak
Estimating the proportion of cases that are ascertained during an outbreak
Handling data from {incidence2}
Software permissions and regulations
Browse package contents
Package details |
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| Author | Pratik R. Gupte [aut, cph] (<https://orcid.org/0000-0001-5294-7819>), Adam Kucharski [aut, cph, cre] (<https://orcid.org/0000-0001-8814-9421>), Tim Russell [aut, cph] (<https://orcid.org/0000-0001-5610-6080>), Joshua W. Lambert [rev] (<https://orcid.org/0000-0001-5218-3046>), Hugo Gruson [rev] (<https://orcid.org/0000-0002-4094-1476>), Tim Taylor [rev] (<https://orcid.org/0000-0002-8587-7113>), James M. Azam [rev] (<https://orcid.org/0000-0001-5782-7330>), Abdoelnaser M. Degoot [rev] (<https://orcid.org/0000-0001-8788-2496>), Sebastian Funk [rev] (<https://orcid.org/0000-0002-2842-3406>) |
| Maintainer | Adam Kucharski <adam.kucharski@lshtm.ac.uk> |
| License | MIT + file LICENSE |
| Version | 0.2.0 |
| URL | https://github.com/epiverse-trace/cfr https://epiverse-trace.github.io/cfr/ |
| Package repository | View on CRAN |
| Installation |
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