Files in chem16S
Chemical Metrics for Microbial Communities
MD5
README.md
NAMESPACE
DESCRIPTION
R/read_RDP.R
R/get_metadata.R
R/plot_metrics.R
R/phyloseq_integration.R
R/chemlab.R
R/get_metric_byrank.R
R/zzz.R
R/get_metrics.R
R/map_taxa.R
inst/NEWS
inst/CITATION
inst/doc/plotting.html
inst/doc/phyloseq.html
inst/doc/plotting.R
inst/doc/metrics.html
inst/doc/metrics.R
inst/doc/plotting.Rmd
inst/doc/phyloseq.Rmd
inst/doc/phyloseq.R
inst/doc/metrics.Rmd
inst/extdata/manual_mappings.csv
inst/extdata/GTDB_220_mappings.csv
inst/extdata/RDP/HLA+16.tab.xz
inst/extdata/RDP/SMS+12.tab.xz
inst/extdata/RDP/BGPF13.tab.xz
inst/extdata/RDP-GTDB_220/HLA+16.tab.xz
inst/extdata/RDP-GTDB_220/SMS+12.tab.xz
inst/extdata/RDP-GTDB_220/BGPF13.tab.xz
inst/extdata/DADA2-GTDB_220/FEN+22/ps_FEN+22.rds
inst/extdata/DADA2-GTDB_220/FEN+22/SraRunInfo.csv
inst/extdata/DADA2-GTDB_220/FEN+22/plot_richness.png
inst/extdata/DADA2-GTDB_220/FEN+22/plot_bar.png
inst/extdata/DADA2-GTDB_220/FEN+22/sample_data.csv
inst/extdata/DADA2-GTDB_220/ZFZ+23/ps_ZFZ+23.rds
inst/extdata/DADA2-GTDB_220/ZFZ+23/SraRunInfo.csv
inst/extdata/DADA2-GTDB_220/ZFZ+23/plot_richness.png
inst/extdata/DADA2-GTDB_220/ZFZ+23/plot_bar.png
inst/extdata/DADA2-GTDB_220/ZFZ+23/sample_data.csv
inst/extdata/metadata/SMS+12.csv
inst/extdata/metadata/BGPF13.csv
inst/extdata/metadata/HLA+16.csv
inst/RefDB/RefSeq_206/genome_AA.R
inst/RefDB/RefSeq_206/taxonomy.csv.xz
inst/RefDB/RefSeq_206/taxonomy.R
inst/RefDB/RefSeq_206/taxon_AA.csv.xz
inst/RefDB/RefSeq_206/taxon_AA.R
inst/RefDB/RefSeq_206/gencat.sh
inst/RefDB/RefSeq_206/README.txt
inst/RefDB/GTDB_220/genome_AA.R
inst/RefDB/GTDB_220/taxonomy.R
inst/RefDB/GTDB_220/taxon_AA.csv.xz
inst/RefDB/GTDB_220/taxon_AA.R
inst/RefDB/GTDB_220/README.txt
inst/images/plot_metrics.png
inst/tinytest/test-chemlab.R
inst/tinytest/test-get_metric_byrank.R
inst/tinytest/test-get_metadata.R
inst/tinytest/test-get_metrics.R
inst/tinytest/test_phyloseq_integration.R
inst/tinytest/test-map_taxa.R
inst/tinytest/test-read_RDP.R
build/vignette.rds
build/partial.rdb
tests/tinytest.R
vignettes/chem16S.bib
vignettes/style.css
vignettes/plotting.Rmd
vignettes/phyloseq.Rmd
vignettes/metrics.Rmd
vignettes/elementa.csl
vignettes/images/tip.png
vignettes/images/note.png
vignettes/images/important.png
vignettes/images/warning.png
vignettes/images/caution.png
data/mouse.silva.rda
data/mouse.RDP.rda
data/mouse.GTDB_220.rda
man/chemlab.Rd
man/get_metadata.Rd
man/plot_metrics.Rd
man/chem16S-data.Rd
man/chem16S-package.Rd
man/get_metrics.Rd
man/get_metric_byrank.Rd
man/map_taxa.Rd
man/phyloseq_integration.Rd
man/read_RDP.Rd
man/macros/macros.Rd
